Variant report

Variant	rs185209126
Chromosome Location	chr3:177663570-177663571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:177532426..177535224-chr3:177663514..177665237,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231574	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177661000-177664000	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:177661000-177664000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr3:177661200-177663800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr3:177661200-177664000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr3:177661200-177664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:177661200-177665800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:177661400-177663800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:177661400-177664000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr3:177661800-177664000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr3:177662200-177663800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:177662600-177663600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr3:177662600-177663800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr3:177662600-177663800	Weak transcription	Adipose Nuclei	Adipose
14	chr3:177662600-177663800	Weak transcription	Spleen	Spleen
15	chr3:177662600-177664000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:177662600-177664200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:177662600-177666400	Weak transcription	Fetal Thymus	thymus
18	chr3:177662800-177663800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:177662800-177664000	Enhancers	Dnd41	blood
20	chr3:177662800-177664200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr3:177662800-177664400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr3:177663000-177664400	Enhancers	Primary T cells from cord blood	blood
23	chr3:177663200-177663600	Weak transcription	Thymus	Thymus
24	chr3:177663200-177664800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr3:177663200-177665400	Enhancers	Fetal Lung	lung
26	chr3:177663200-177666800	Weak transcription	Primary B cells from cord blood	blood
27	chr3:177663400-177663600	Enhancers	Hela-S3	cervix
28	chr3:177663400-177663800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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