Variant report

Variant	rs1852545
Chromosome Location	chr4:98868121-98868122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 217 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs10000573	0.88[EUR][1000 genomes]
rs10004827	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10005118	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10005120	0.88[EUR][1000 genomes]
rs10007663	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10007872	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10009206	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10012167	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10014284	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10017530	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10018654	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10021044	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10025364	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10025651	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10029372	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10029849	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10031292	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10033994	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10034619	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10049627	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10050008	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11097582	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1111541	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11721453	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11726758	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11727653	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11729596	0.89[EUR][1000 genomes]
rs11729640	0.89[EUR][1000 genomes]
rs11735105	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11932942	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12163918	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13102369	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13108422	0.90[EUR][1000 genomes]
rs13108535	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13110418	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13115356	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13118892	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13118945	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13121558	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13121766	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13122456	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13122897	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13124904	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127542	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13130923	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13131962	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13132395	0.88[EUR][1000 genomes]
rs13136930	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13137152	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13137808	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13137859	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13138051	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13138059	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13138063	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13138438	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13140514	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13146909	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13147768	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13148324	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349757	0.90[EUR][1000 genomes]
rs1426661	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1426666	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1527516	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17026973	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17027058	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17484890	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17484966	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17549003	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17550735	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17558151	0.90[EUR][1000 genomes]
rs17558193	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1834647	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1834648	0.88[EUR][1000 genomes]
rs1869897	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2114426	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2167892	0.89[EUR][1000 genomes]
rs2839836	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28415600	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28417716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485415	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28619044	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28622458	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2865981	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2865982	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2865993	0.89[EUR][1000 genomes]
rs28729647	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28758886	0.89[EUR][1000 genomes]
rs28761309	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28791018	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2903154	0.90[EUR][1000 genomes]
rs34164616	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34313689	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34318449	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34528953	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34613258	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34870112	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34892904	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34943050	0.83[EUR][1000 genomes]
rs35195511	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35235971	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35491210	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35531558	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35644814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35685312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35721906	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35752787	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35865860	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35951881	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36028444	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3846443	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3846444	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3846445	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3852122	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3852123	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3857216	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3857217	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3896704	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3911282	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4334758	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4502686	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699324	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4699326	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4699327	0.86[EUR][1000 genomes]
rs4699331	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4699595	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4699601	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4699602	0.83[EUR][1000 genomes]
rs58367603	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59751489	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60007031	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60028147	0.81[EUR][1000 genomes]
rs60391193	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60994860	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62318502	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318503	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318504	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318642	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62318644	0.86[ASN][1000 genomes]
rs62321592	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62321597	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62321598	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6532721	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6815312	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6817645	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6818045	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6819047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827516	0.93[EUR][1000 genomes]
rs6829567	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6831925	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6839277	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6840669	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6843777	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848786	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6853266	0.88[EUR][1000 genomes]
rs6853608	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6854902	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6854919	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6855393	0.87[EUR][1000 genomes]
rs7377018	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7657179	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7657644	0.88[EUR][1000 genomes]
rs7659006	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7659593	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7659801	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7663438	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7663661	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7663924	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7664051	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7664169	0.87[EUR][1000 genomes]
rs7664305	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7664340	0.90[EUR][1000 genomes]
rs7672127	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7672720	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7672901	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7673880	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7674095	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7674407	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7678557	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7678564	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7678567	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7678911	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7679299	0.90[EUR][1000 genomes]
rs7680909	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7682991	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7687958	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7691433	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7691864	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7696686	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7696715	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7697315	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs880470	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs921521	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992257	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9992281	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9992360	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9992391	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9992470	0.82[EUR][1000 genomes]
rs9994346	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9996098	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998803	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9999200	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879643	chr4:98317295-99065480	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv868914	chr4:98416047-98969285	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1012612	chr4:98433491-98949873	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002098	chr4:98501337-99086320	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537193	chr4:98501337-99086320	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv879648	chr4:98547717-99104879	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1000011	chr4:98562308-99101692	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv879649	chr4:98652600-98873667	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv932060	chr4:98696832-98902498	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1000956	chr4:98732458-99178588	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv530387	chr4:98757752-98922248	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1005567	chr4:98779722-99031934	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv995045	chr4:98802844-99022958	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv11264	chr4:98841655-99028842	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv830017	chr4:98866299-99047777	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98864400-98874800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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