Variant report

Variant	rs1853371
Chromosome Location	chr9:14245767-14245768
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:40007058..40008578-chr9:14244599..14246120,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10961447	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73645022	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv892598	chr9:14234315-14274950	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14224400-14246800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:14238400-14246200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:14238800-14246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:14238800-14246200	Weak transcription	Aorta	Aorta
5	chr9:14238800-14249800	Weak transcription	Fetal Intestine Small	intestine
6	chr9:14238800-14250000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:14239600-14246000	Enhancers	HUVEC	blood vessel
8	chr9:14239800-14251200	Weak transcription	Hela-S3	cervix
9	chr9:14241000-14246400	Weak transcription	Spleen	Spleen
10	chr9:14241000-14249800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:14241000-14250000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:14241200-14246200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:14241200-14246200	Weak transcription	Right Atrium	heart
14	chr9:14241200-14246400	Weak transcription	Brain Anterior Caudate	brain
15	chr9:14241200-14246400	Weak transcription	Gastric	stomach
16	chr9:14241200-14247000	Weak transcription	Fetal Stomach	stomach
17	chr9:14241200-14247200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:14241200-14247400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:14241200-14247400	Weak transcription	Brain Substantia Nigra	brain
20	chr9:14241200-14247600	Enhancers	Fetal Heart	heart
21	chr9:14241200-14247800	Weak transcription	Pancreas	Pancrea
22	chr9:14241200-14249600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:14241400-14246200	Weak transcription	NHEK	skin
24	chr9:14241400-14247200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:14241400-14249800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr9:14241400-14251000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:14241400-14251000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr9:14241400-14251200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:14242800-14249400	Weak transcription	Brain Angular Gyrus	brain
30	chr9:14243200-14245800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:14243800-14246200	Enhancers	NH-A	brain
32	chr9:14243800-14250000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:14244000-14246000	Weak transcription	NHLF	lung
34	chr9:14244000-14246200	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr9:14244000-14246200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr9:14244000-14251000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:14244000-14251200	Weak transcription	Fetal Brain Male	brain
38	chr9:14244200-14246400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr9:14244200-14246800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr9:14244200-14250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr9:14244400-14250200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:14244600-14248800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr9:14244800-14245800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:14244800-14246200	Enhancers	HMEC	breast
45	chr9:14245000-14245800	Enhancers	A549	lung
46	chr9:14245000-14246200	Enhancers	HSMM	muscle
47	chr9:14245000-14247000	Weak transcription	Fetal Brain Female	brain
48	chr9:14245000-14247000	Enhancers	Osteobl	bone
49	chr9:14245200-14246000	Weak transcription	Brain Germinal Matrix	brain
50	chr9:14245200-14246200	Strong transcription	Fetal Muscle Leg	muscle

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