Variant report

Variant	rs1853435
Chromosome Location	chr20:16115140-16115141
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1323304	0.86[AFR][1000 genomes]
rs1853434	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1923954	0.81[AFR][1000 genomes]
rs2760541	0.82[AFR][1000 genomes]
rs2760542	0.82[AFR][1000 genomes]
rs2760548	0.82[AFR][1000 genomes]
rs2760550	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2760551	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2760552	0.82[AFR][1000 genomes]
rs2760553	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2760554	0.84[AFR][1000 genomes]
rs2760555	0.82[AFR][1000 genomes]
rs2788927	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2788930	0.84[AFR][1000 genomes]
rs6080133	0.83[AFR][1000 genomes]
rs7273081	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73901418	0.83[AFR][1000 genomes]
rs912183	0.82[AFR][1000 genomes]
rs927560	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16104400-16121600	Weak transcription	Primary B cells from cord blood	blood
2	chr20:16113000-16115200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr20:16113400-16115600	Enhancers	Adipose Nuclei	Adipose
4	chr20:16114200-16115200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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