Variant report

Variant	rs185344158
Chromosome Location	chr15:75546710-75546711
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr15:75546212-75546846	HepG2	liver:	n/a	chr15:75546351-75546363
2	TCF12	chr15:75546378-75546725	HepG2	liver:	n/a	n/a
3	SPI1	chr15:75546472-75546995	GM12891	blood:	n/a	chr15:75546956-75546969 chr15:75546957-75546970 chr15:75546607-75546620 chr15:75546609-75546618
4	SPI1	chr15:75546417-75546758	GM12878	blood:	n/a	chr15:75546607-75546620 chr15:75546609-75546618
5	HEY1	chr15:75546460-75546725	HepG2	liver:	n/a	n/a
6	FOXP2	chr15:75546498-75546719	SK-N-MC	brain:	n/a	n/a
7	POU2F2	chr15:75546436-75547130	GM12878	blood:	n/a	n/a
8	GABPA	chr15:75546443-75546760	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr15:75546425-75547154	H1-hESC	embryonic stem cell:	n/a	n/a
10	ZBTB33	chr15:75546400-75546755	HepG2	liver:	n/a	n/a
11	SP1	chr15:75546242-75546832	HepG2	liver:	n/a	chr15:75546436-75546450
12	POLR2A	chr15:75546484-75546924	H1-hESC	embryonic stem cell:	n/a	n/a
13	USF1	chr15:75546449-75546796	HepG2	liver:	n/a	n/a
14	RXRA	chr15:75546368-75546743	HepG2	liver:	n/a	chr15:75546666-75546675
15	SPI1	chr15:75546478-75546740	K562	blood:	n/a	chr15:75546607-75546620 chr15:75546609-75546618
16	ZBTB33	chr15:75546629-75547041	K562	blood:	n/a	n/a
17	SPI1	chr15:75546456-75546746	K562	blood:	n/a	chr15:75546607-75546620 chr15:75546609-75546618
18	FOSL2	chr15:75546410-75546858	HepG2	liver:	n/a	n/a
19	POLR2A	chr15:75546351-75547470	H1-hESC	embryonic stem cell:	n/a	n/a
20	SPI1	chr15:75546426-75547075	GM12891	blood:	n/a	chr15:75546956-75546969 chr15:75546957-75546970 chr15:75546607-75546620 chr15:75546609-75546618

Variant related genes	Relation type
GOLGA6C	TF binding region
ENSG00000260104	TF binding region
NIFKP4	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv482859	chr15:75493899-75688451	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv1035829	chr15:75504534-75692417	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	nsv977736	chr15:75509295-75632679	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	esv3332853	chr15:75538752-75607377	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv15468	chr15:75542372-75591622	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv821359	chr15:75542372-75591622	Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv1613	chr15:75542832-75588655	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv9277	chr15:75545225-75583588	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
12	esv996044	chr15:75546068-75588171	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75544600-75547000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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