Variant report

Variant	rs185403370
Chromosome Location	chr5:177020283-177020284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:176978290..176981747-chr5:177017313..177020640,7	MCF-7	breast:
2	chr5:176943414..176949809-chr5:177018256..177021226,8	MCF-7	breast:
3	chr5:176946312..176949197-chr5:177018379..177020484,2	K562	blood:
4	chr5:176979031..176980967-chr5:177019678..177022578,2	MCF-7	breast:
5	chr5:176959784..176964247-chr5:177018558..177022874,5	MCF-7	breast:
6	chr5:176939485..176941829-chr5:177017923..177020658,4	MCF-7	breast:
7	chr5:176923095..176925209-chr5:177019148..177022259,3	MCF-7	breast:
8	chr5:177019232..177020994-chr5:177656791..177659399,2	K562	blood:
9	chr5:176942293..176944420-chr5:177019101..177021147,2	MCF-7	breast:
10	chr5:176980076..176982423-chr5:177017925..177021146,3	K562	blood:
11	chr5:176936816..176938708-chr5:177019651..177022498,2	MCF-7	breast:
12	chr5:176951222..176953772-chr5:177019144..177020770,2	MCF-7	breast:
13	chr5:177018435..177020960-chr5:177539226..177540753,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145911	Chromatin interaction
ENSG00000146067	Chromatin interaction
ENSG00000272459	Chromatin interaction
ENSG00000146094	Chromatin interaction
ENSG00000183258	Chromatin interaction
ENSG00000196923	Chromatin interaction
ENSG00000175309	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916108	chr5:176688459-177078723	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
3	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv1022630	chr5:176975746-177028082	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv537966	chr5:176975746-177028082	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv883181	chr5:176978496-177034786	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
8	esv3348457	chr5:176995395-177020808	Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv883183	chr5:177019379-177030351	Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177018600-177020400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr5:177018600-177020400	Active TSS	Rectal Smooth Muscle	rectum
3	chr5:177018600-177020400	Active TSS	HSMMtube	muscle
4	chr5:177018600-177020600	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr5:177018800-177020400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:177018800-177020400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr5:177018800-177020400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:177018800-177020400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:177018800-177020400	Active TSS	NH-A	brain
10	chr5:177018800-177020400	Active TSS	NHLF	lung
11	chr5:177018800-177020600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:177019000-177020400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr5:177019000-177020400	Active TSS	GM12878-XiMat	blood
14	chr5:177019200-177020400	Active TSS	Pancreas	Pancrea
15	chr5:177019200-177020600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
16	chr5:177019400-177020400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr5:177019600-177020400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:177019600-177020400	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr5:177019800-177020400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr5:177019800-177020400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr5:177019800-177020400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:177019800-177020400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:177019800-177020400	Flanking Active TSS	Liver	Liver
24	chr5:177019800-177020400	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr5:177019800-177020400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr5:177019800-177020400	Flanking Active TSS	Dnd41	blood
27	chr5:177019800-177020600	Flanking Active TSS	Colon Smooth Muscle	Colon
28	chr5:177019800-177020600	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr5:177020000-177020400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:177020000-177020400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:177020000-177020400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr5:177020000-177020400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr5:177020000-177020400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr5:177020000-177020400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:177020000-177020400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr5:177020000-177020400	Flanking Active TSS	Colonic Mucosa	Colon
37	chr5:177020000-177020400	Weak transcription	Fetal Kidney	kidney
38	chr5:177020000-177020400	Enhancers	Fetal Lung	lung
39	chr5:177020000-177020400	Flanking Active TSS	Placenta	Placenta
40	chr5:177020000-177020400	Weak transcription	Lung	lung
41	chr5:177020000-177020400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr5:177020000-177020400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:177020000-177020400	Weak transcription	Spleen	Spleen
44	chr5:177020000-177020400	Flanking Active TSS	K562	blood
45	chr5:177020000-177020600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr5:177020000-177020600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr5:177020000-177020600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr5:177020000-177020600	Weak transcription	Ovary	ovary
49	chr5:177020000-177020600	Enhancers	Stomach Mucosa	stomach
50	chr5:177020000-177020800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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