Variant report

Variant	rs185468031
Chromosome Location	chrX:64154098-64154099
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830378	chrX:63523802-64234414	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv3431143	chrX:64153980-64192703	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
4	esv3447048	chrX:64153980-64196277	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64132200-64155200	Weak transcription	Small Intestine	intestine
2	chrX:64139200-64154800	Weak transcription	Thymus	Thymus
3	chrX:64150000-64154400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chrX:64152600-64155200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chrX:64153000-64155200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chrX:64153200-64155600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chrX:64153400-64154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chrX:64153400-64155400	ZNF genes & repeats	Dnd41	blood
9	chrX:64153600-64154400	ZNF genes & repeats	Brain Germinal Matrix	brain
10	chrX:64153600-64154600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chrX:64153600-64155400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chrX:64153600-64156000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chrX:64153600-64156000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chrX:64153600-64156200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chrX:64153800-64154400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chrX:64153800-64154400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chrX:64153800-64154600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chrX:64153800-64155000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chrX:64153800-64155200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chrX:64153800-64155400	ZNF genes & repeats	Aorta	Aorta
21	chrX:64153800-64155600	ZNF genes & repeats	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links