Variant report

Variant	rs1854794
Chromosome Location	chr1:94627348-94627349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11576824	0.87[EUR][1000 genomes]
rs11577575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036495	0.84[EUR][1000 genomes]
rs12742802	0.87[EUR][1000 genomes]
rs17111191	0.86[EUR][1000 genomes]
rs34859529	0.85[EUR][1000 genomes]
rs7412971	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94608400-94632400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:94625800-94627400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:94626000-94627400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:94626600-94635800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:94626800-94634800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:94626800-94635200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:94626800-94636800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:94626800-94636800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:94626800-94639200	Weak transcription	NHLF	lung
10	chr1:94626800-94639400	Weak transcription	Psoas Muscle	Psoas
11	chr1:94626800-94639400	Weak transcription	NHEK	skin
12	chr1:94626800-94643400	Weak transcription	Fetal Heart	heart
13	chr1:94627000-94634200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:94627000-94634200	Weak transcription	HSMM	muscle
15	chr1:94627000-94634200	Weak transcription	HUVEC	blood vessel
16	chr1:94627000-94634400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:94627000-94634600	Weak transcription	Osteobl	bone
18	chr1:94627000-94636200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:94627000-94639400	Weak transcription	HSMMtube	muscle
20	chr1:94627200-94634200	Weak transcription	NH-A	brain
21	chr1:94627200-94634400	Weak transcription	NHDF-Ad	bronchial

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