Variant report

Variant	rs185534642
Chromosome Location	chrX:138819139-138819140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:138796802..138798801-chrX:138817390..138820201,2	K562	blood:
2	chrX:138818456..138819998-chrX:138822453..138824439,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532936	chrX:138687855-139384681	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv491760	chrX:138780768-139283477	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
3	nsv7116	chrX:138815720-138851105	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138797000-138821000	Weak transcription	Primary T cells from cord blood	blood
2	chrX:138802200-138836600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chrX:138802400-138820800	Weak transcription	Hela-S3	cervix
4	chrX:138802400-138821800	Weak transcription	HSMM	muscle
5	chrX:138802600-138820400	Weak transcription	HUVEC	blood vessel
6	chrX:138803800-138821000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chrX:138804800-138832000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chrX:138805200-138829200	Weak transcription	Duodenum Mucosa	Duodenum
9	chrX:138805400-138819600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chrX:138805400-138835200	Weak transcription	Primary hematopoietic stem cells	blood
11	chrX:138805800-138820800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chrX:138806400-138819600	Weak transcription	Fetal Intestine Large	intestine
13	chrX:138806600-138836400	Weak transcription	Dnd41	blood
14	chrX:138806800-138820800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chrX:138806800-138866800	Weak transcription	Left Ventricle	heart
16	chrX:138807200-138858200	Weak transcription	Primary B cells from cord blood	blood
17	chrX:138807600-138820800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chrX:138807600-138831200	Weak transcription	Fetal Muscle Trunk	muscle
19	chrX:138807800-138825400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chrX:138807800-138832400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chrX:138808200-138835600	Weak transcription	Fetal Stomach	stomach
22	chrX:138808400-138832600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chrX:138809000-138822600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chrX:138809000-138836000	Weak transcription	Adipose Nuclei	Adipose
25	chrX:138810000-138827200	Weak transcription	Stomach Smooth Muscle	stomach
26	chrX:138810000-138835000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chrX:138810600-138820400	Weak transcription	HSMMtube	muscle
28	chrX:138810600-138840400	Weak transcription	K562	blood
29	chrX:138811200-138834800	Weak transcription	Spleen	Spleen
30	chrX:138811400-138822400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chrX:138812200-138832200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chrX:138812800-138826000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chrX:138812800-138831200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chrX:138812800-138835600	Weak transcription	Fetal Thymus	thymus
35	chrX:138813600-138833400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chrX:138814000-138820800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chrX:138814000-138883600	Weak transcription	Gastric	stomach
38	chrX:138814200-138848400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chrX:138814400-138821200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chrX:138814600-138827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chrX:138815200-138827200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chrX:138815200-138849000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chrX:138815400-138819400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chrX:138815400-138821000	Weak transcription	Osteobl	bone
45	chrX:138815400-138829200	Weak transcription	HepG2	liver
46	chrX:138815800-138819400	Weak transcription	Colon Smooth Muscle	Colon
47	chrX:138815800-138819800	Strong transcription	Primary B cells from peripheral blood	blood
48	chrX:138815800-138854200	Weak transcription	Thymus	Thymus
49	chrX:138816200-138823200	Strong transcription	Liver	Liver
50	chrX:138816400-138821200	Strong transcription	Monocytes-CD14+_RO01746	blood

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