The 2.0 version of rSNPBase

Variant report

Variant rs185539839
Chromosome Location chr7:116383359-116383360
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:116351800-116407000 Weak transcription Duodenum Mucosa Duodenum
2 chr7:116357400-116409800 Weak transcription Placenta Amnion Placenta Amnion
3 chr7:116375000-116418400 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr7:116375800-116411200 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr7:116377800-116395600 Weak transcription NH-A brain
6 chr7:116378000-116389000 Weak transcription Stomach Mucosa stomach
7 chr7:116378800-116422200 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr7:116379000-116384600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr7:116379000-116385200 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr7:116379200-116384400 Weak transcription H9 Cell Line embryonic stem cell
11 chr7:116380400-116383800 Weak transcription Spleen Spleen
12 chr7:116381200-116384000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr7:116381200-116392200 Weak transcription HUVEC blood vessel
14 chr7:116381400-116413400 Weak transcription NHLF lung
15 chr7:116381600-116383800 Enhancers Fetal Kidney kidney
16 chr7:116381600-116384200 Weak transcription Gastric stomach
17 chr7:116381600-116398600 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr7:116381600-116418600 Weak transcription Aorta Aorta
19 chr7:116381800-116384000 Enhancers Fetal Muscle Leg muscle
20 chr7:116381800-116385600 Weak transcription Lung lung
21 chr7:116381800-116407000 Weak transcription Pancreas Pancrea
22 chr7:116382000-116398000 Weak transcription Hela-S3 cervix
23 chr7:116382000-116413400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr7:116382200-116384200 Strong transcription Osteobl bone
25 chr7:116382200-116384400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr7:116382200-116384400 Strong transcription A549 lung
27 chr7:116382200-116409800 Weak transcription Placenta Placenta
28 chr7:116382400-116383600 Strong transcription HSMM muscle
29 chr7:116382400-116384000 Strong transcription NHEK skin
30 chr7:116382400-116384200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr7:116382400-116384200 Weak transcription Fetal Lung lung
32 chr7:116382400-116384600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr7:116382400-116384800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr7:116382400-116396400 Weak transcription HMEC breast
35 chr7:116382600-116384200 Strong transcription Rectal Mucosa Donor 31 rectum
36 chr7:116382800-116383800 Genic enhancers Fetal Muscle Trunk muscle
37 chr7:116382800-116384000 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr7:116382800-116384000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr7:116383000-116384000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr7:116383000-116384000 Genic enhancers Fetal Stomach stomach
41 chr7:116383000-116385000 Strong transcription Muscle Satellite Cultured Cells --
42 chr7:116383000-116392400 Weak transcription Left Ventricle heart
43 chr7:116383000-116396800 Weak transcription Psoas Muscle Psoas
44 chr7:116383200-116384000 Enhancers HepG2 liver
45 chr7:116383200-116384200 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr7:116383200-116384200 Enhancers Liver Liver
47 chr7:116383200-116387800 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015