Variant report

Variant	rs185547817
Chromosome Location	chr1:173896492-173896493
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173883070..173883952-chr1:173895805..173896665,2	MCF-7	breast:
2	chr1:173837620..173839662-chr1:173894779..173896682,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117601	Chromatin interaction
ENSG00000234741	Chromatin interaction
ENSG00000185278	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
2	esv2757761	chr1:173810642-173955943	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	264 gene(s)	inside rSNPs	diseases
3	esv2758978	chr1:173810642-173955943	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	264 gene(s)	inside rSNPs	diseases
4	esv3407396	chr1:173896346-173917122	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173856600-173907200	Weak transcription	Brain Germinal Matrix	brain
2	chr1:173857400-173902000	Weak transcription	HSMMtube	muscle
3	chr1:173858200-173902800	Weak transcription	Left Ventricle	heart
4	chr1:173870000-173898000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:173871200-173908400	Weak transcription	Spleen	Spleen
6	chr1:173874400-173899800	Weak transcription	Primary T cells from cord blood	blood
7	chr1:173879200-173899400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:173882800-173912400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:173888400-173900200	Weak transcription	Right Atrium	heart
10	chr1:173891200-173899400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:173893400-173908400	Weak transcription	Colonic Mucosa	Colon
12	chr1:173894000-173896600	Enhancers	Fetal Intestine Large	intestine
13	chr1:173894000-173897000	Enhancers	Fetal Intestine Small	intestine
14	chr1:173894000-173904800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:173894400-173905000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:173894600-173899200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:173894600-173907800	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:173894600-173914400	Weak transcription	Right Ventricle	heart
19	chr1:173895000-173902400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr1:173895000-173903400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:173895200-173900000	Weak transcription	A549	lung
22	chr1:173895200-173912200	Weak transcription	Stomach Mucosa	stomach
23	chr1:173895400-173898200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:173895400-173900000	Weak transcription	K562	blood
25	chr1:173895400-173907600	Weak transcription	Ovary	ovary
26	chr1:173895600-173901200	Weak transcription	HUVEC	blood vessel
27	chr1:173895600-173906200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:173895800-173906200	Weak transcription	HepG2	liver
29	chr1:173896000-173899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:173896000-173899600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:173896200-173896600	Flanking Active TSS	Liver	Liver
32	chr1:173896400-173901400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr1:173896400-173902800	Weak transcription	Brain Anterior Caudate	brain
34	chr1:173896400-173907800	Weak transcription	Gastric	stomach
35	chr1:173896400-173910000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:173896400-173914400	Weak transcription	Pancreas	Pancrea

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