Variant report

Variant	rs185589989
Chromosome Location	chr1:47366392-47366393
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr1:47365969-47366434	MCF-7	breast:	n/a	n/a
2	EP300	chr1:47366181-47366421	MCF-7	breast:	n/a	n/a
3	JUND	chr1:47366123-47366503	T-47D	breast:	n/a	n/a
4	EP300	chr1:47365935-47366436	T-47D	breast:	n/a	n/a
5	SRF	chr1:47366178-47366449	MCF-7	breast:	n/a	n/a
6	FOXA1	chr1:47366060-47366418	T-47D	breast:	n/a	n/a
7	GATA3	chr1:47366097-47366545	T-47D	breast:	n/a	chr1:47366326-47366338
8	FOXA1	chr1:47366066-47366397	T-47D	breast:	n/a	n/a
9	EP300	chr1:47366030-47366432	T-47D	breast:	n/a	n/a
10	GATA3	chr1:47365975-47366430	T-47D	breast:	n/a	chr1:47366326-47366338

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:47366366-47366416	GM19239	blood:	n/a
2	chr1:47366366-47366416	NHDF-neo	bronchial:	n/a
3	chr1:47366366-47366416	HRPEpiC	eye:	n/a
4	chr1:47366366-47366416	HRCEpiC	kidney:	n/a
5	chr1:47366366-47366416	HAEpiC	amniotic membrane:	n/a
6	chr1:47366366-47366416	GM12878	blood:	n/a
7	chr1:47366366-47366416	U87	brain:	n/a
8	chr1:47366366-47366416	PANC-1	pancreas:	n/a
9	chr1:47366366-47366416	NB4	blood:	n/a
10	chr1:47366366-47366416	BJ	skin:	n/a
11	chr1:47366366-47366416	MCF10A-Er-Src	breast:	n/a
12	chr1:47366366-47366416	ovcar-3	ovarian:	n/a
13	chr1:47366366-47366416	T-47D	breast:	n/a
14	chr1:47366366-47366416	ECC-1	luminal epithelium:	n/a
15	chr1:47366366-47366416	Caco-2	colon:	n/a
16	chr1:47366366-47366416	SKMC	muscle:	n/a
17	chr1:47366366-47366416	NT2-D1	testis:	n/a
18	chr1:47366366-47366416	HRE	kidney:	n/a
19	chr1:47366366-47366416	A549	lung:	n/a
20	chr1:47366366-47366416	HL-60	blood:	n/a
21	chr1:47366366-47366416	HPAEpiC	pulmonary alveolar:	n/a
22	chr1:47366366-47366416	SK-N-SH_RA	brain:	n/a
23	chr1:47366366-47366416	AoSMC	blood vessel:	n/a
24	chr1:47366366-47366416	HNPCEpiC	eye:	n/a
25	chr1:47366366-47366416	HepG2	liver:	n/a
26	chr1:47366366-47366416	PFSK-1	brain:	n/a
27	chr1:47366366-47366416	AG09309	skin:	n/a
28	chr1:47366366-47366416	K562	blood:	n/a
29	chr1:47366366-47366416	Jurkat	blood:	n/a
30	chr1:47366366-47366416	MCF-7	breast:	n/a
31	chr1:47366366-47366416	HCPEpiC	choroid plexus:	n/a
32	chr1:47366366-47366416	PrEC	prostate:	n/a
33	chr1:47366366-47366416	AG04449	skin:	fetal
34	chr1:47366366-47366416	AG09319	gingival:	n/a
35	chr1:47366366-47366416	LNCaP	prostate:	n/a
36	chr1:47366366-47366416	HEEpiC	esophagus:	n/a
37	chr1:47366366-47366416	AG04450	lung:	fetal
38	chr1:47366366-47366416	GM12891	blood:	n/a
39	chr1:47366366-47366416	HCM	heart:	n/a
40	chr1:47366366-47366416	HUVEC	blood vessel:	n/a
41	chr1:47366366-47366416	GM12892	blood:	n/a
42	chr1:47366366-47366416	RPTEC	kidney:	n/a
43	chr1:47366366-47366416	NH-A	brain:	n/a
44	chr1:47366366-47366416	CMK	blood:	n/a
45	chr1:47366366-47366416	HEK293	kidney:	embryo
46	chr1:47366366-47366416	SK-N-MC	brain:	n/a
47	chr1:47366366-47366416	HIPEpiC	eye:	n/a
48	chr1:47366366-47366416	AG10803	skin:	n/a
49	chr1:47366366-47366416	GM06990	blood:	n/a
50	chr1:47366366-47366416	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
CYP4Z2P	TF binding region
CYP4Z2P	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013048	chr1:47132831-47377364	Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv534955	chr1:47132831-47377364	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv871958	chr1:47350374-47517123	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1009338	chr1:47358532-47555253	Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2763300	chr1:47358532-47628774	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv870695	chr1:47363893-47502714	Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv871288	chr1:47363893-47507808	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv871377	chr1:47363893-47517123	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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