Variant report

Variant	rs1855916
Chromosome Location	chr10:94254283-94254284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94252651..94255097-chr10:94255766..94258601,2	K562	blood:

Variant related genes	Relation type
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11187061	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs11187074	0.88[EUR][1000 genomes]
rs1887922	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1970245	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1987122	0.86[EUR][1000 genomes]
rs3118967	1.00[ASN][1000 genomes]
rs4406744	0.88[EUR][1000 genomes]
rs520711	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551266	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6583819	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583821	0.88[EUR][1000 genomes]
rs7073248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7084090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7093418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097014	0.86[EUR][1000 genomes]
rs7100623	0.88[EUR][1000 genomes]
rs7894448	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7898493	0.85[EUR][1000 genomes]
rs7908111	0.88[EUR][1000 genomes]
rs7909636	0.88[EUR][1000 genomes]
rs7917163	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:94230000-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:94230400-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:94239600-94280400	Weak transcription	Fetal Brain Male	brain
7	chr10:94240200-94265400	Weak transcription	Fetal Heart	heart
8	chr10:94243000-94254800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:94244000-94303000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:94244200-94259000	Weak transcription	Esophagus	oesophagus
11	chr10:94248400-94268200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:94250000-94258600	Weak transcription	NH-A	brain
13	chr10:94250000-94272400	Weak transcription	Fetal Brain Female	brain
14	chr10:94250200-94257000	Weak transcription	Right Ventricle	heart
15	chr10:94250200-94257400	Weak transcription	Placenta	Placenta
16	chr10:94250200-94258400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:94250200-94259400	Weak transcription	HSMMtube	muscle
18	chr10:94250200-94261800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:94250200-94263400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:94250200-94265200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:94250200-94267000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:94250200-94267000	Weak transcription	NHLF	lung
23	chr10:94250200-94267400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:94250200-94267400	Weak transcription	Colonic Mucosa	Colon
25	chr10:94250200-94267600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:94250200-94267600	Weak transcription	Gastric	stomach
27	chr10:94250200-94267600	Weak transcription	NHDF-Ad	bronchial
28	chr10:94250200-94267800	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:94250200-94271400	Weak transcription	Brain Angular Gyrus	brain
30	chr10:94250200-94289400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:94250200-94295200	Weak transcription	Pancreas	Pancrea
32	chr10:94250200-94297200	Weak transcription	Brain Germinal Matrix	brain
33	chr10:94250200-94313800	Weak transcription	Brain Substantia Nigra	brain
34	chr10:94250400-94257000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:94250400-94258000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:94250400-94260000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:94250400-94260200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:94250400-94263200	Weak transcription	Small Intestine	intestine
39	chr10:94250400-94264800	Weak transcription	Osteobl	bone
40	chr10:94250400-94267000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:94250400-94267400	Weak transcription	Ovary	ovary
42	chr10:94250400-94267400	Weak transcription	HSMM	muscle
43	chr10:94250400-94268400	Weak transcription	Aorta	Aorta
44	chr10:94250400-94269000	Weak transcription	Thymus	Thymus
45	chr10:94250400-94271200	Weak transcription	K562	blood
46	chr10:94250400-94271400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr10:94250400-94271600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr10:94250400-94272000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr10:94250400-94301000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr10:94250400-94307400	Weak transcription	Spleen	Spleen

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