Variant report

Variant	rs1855976
Chromosome Location	chr10:82903922-82903923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11188779	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17093983	0.85[EUR][1000 genomes]
rs1855975	1.00[CEU][hapmap]
rs35283742	0.81[EUR][1000 genomes]
rs4319456	0.81[EUR][1000 genomes]
rs7067607	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7075925	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7915587	0.81[EUR][1000 genomes]
rs7918300	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043546	chr10:82745555-82940404	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv540724	chr10:82745555-82940404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv517526	chr10:82878488-82914029	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv551647	chr10:82878488-82917110	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv518030	chr10:82879719-82941755	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv948103	chr10:82903571-82904860	Inactive region	TF binding region	1 gene(s)	n/a	diseases
7	esv3345925	chr10:82903597-82906145	Inactive region	TF binding region	1 gene(s)	n/a	diseases
8	esv3491307	chr10:82903922-82905920	Inactive region	TF binding region	1 gene(s)	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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