Variant report

Variant	rs1856702
Chromosome Location	chr10:25517732-25517733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11014447	0.83[AFR][1000 genomes]
rs1339998	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1856701	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1856703	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2182353	0.82[AMR][1000 genomes]
rs2248279	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2765704	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2765705	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2765712	0.83[AMR][1000 genomes]
rs2791324	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2807230	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2807231	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2807232	0.90[AMR][1000 genomes]
rs2807233	0.83[AMR][1000 genomes]
rs2807235	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2807236	0.83[AMR][1000 genomes]
rs2807240	0.87[AMR][1000 genomes]
rs2807241	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25516400-25521000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25516400-25521200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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