Variant report

Variant	rs1856705
Chromosome Location	chr9:18463876-18463877
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10511658	1.00[AMR][1000 genomes]
rs11999281	1.00[AMR][1000 genomes]
rs12000949	1.00[AMR][1000 genomes]
rs12000950	1.00[AMR][1000 genomes]
rs12001004	1.00[AMR][1000 genomes]
rs12002126	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003118	1.00[AMR][1000 genomes]
rs12003267	1.00[AMR][1000 genomes]
rs12003900	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005242	1.00[AMR][1000 genomes]
rs16936711	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936729	0.90[AFR][1000 genomes]
rs16936775	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936780	1.00[AMR][1000 genomes]
rs16936815	1.00[AMR][1000 genomes]
rs1888064	1.00[AMR][1000 genomes]
rs57153018	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58068158	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58526635	1.00[AMR][1000 genomes]
rs60008508	0.81[AFR][1000 genomes]
rs60199560	1.00[AMR][1000 genomes]
rs60288112	1.00[AMR][1000 genomes]
rs60561389	1.00[AMR][1000 genomes]
rs6475217	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7019792	1.00[AMR][1000 genomes]
rs7040544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417101	1.00[AMR][1000 genomes]
rs73418922	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418924	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418940	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73421011	1.00[AMR][1000 genomes]
rs73421013	1.00[AMR][1000 genomes]
rs73421023	1.00[AMR][1000 genomes]
rs73421030	1.00[AMR][1000 genomes]
rs73421031	1.00[AMR][1000 genomes]
rs73421035	1.00[AMR][1000 genomes]
rs870019	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18460800-18464000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:18461000-18466200	Weak transcription	Hela-S3	cervix
3	chr9:18463000-18464200	Enhancers	NHEK	skin
4	chr9:18463400-18464200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:18463400-18464200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:18463400-18464200	Enhancers	NHDF-Ad	bronchial
7	chr9:18463400-18464400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:18463400-18464400	Enhancers	HMEC	breast
9	chr9:18463600-18464400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:18463800-18464200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:18463800-18464200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:18463800-18464400	Enhancers	HUVEC	blood vessel
13	chr9:18463800-18464400	Enhancers	NHLF	lung

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