Variant report
| Variant | rs1856852 |
|---|---|
| Chromosome Location | chr6:49836993-49836994 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CBX3 | chr6:49836633-49837023 | K562 | blood: | n/a | n/a |
| 2 | CEBPB | chr6:49836984-49837230 | Hela-S3 | cervix: | n/a | n/a |
| 3 | KAP1 | chr6:49836640-49837022 | K562 | blood: | n/a | n/a |
| 4 | TRIM28 | chr6:49836652-49837021 | K562 | blood: | n/a | n/a |
| 5 | SETDB1 | chr6:49836721-49837302 | U2OS | brain: | n/a | n/a |
| 6 | CEBPB | chr6:49836906-49837269 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CRISP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs1084051 | 0.81[AFR][1000 genomes] |
| rs1150849 | 1.00[EUR][1000 genomes] |
| rs1340823 | 0.81[AFR][1000 genomes] |
| rs1578371 | 1.00[EUR][1000 genomes] |
| rs1652094 | 1.00[EUR][1000 genomes] |
| rs780555 | 1.00[EUR][1000 genomes] |
| rs780557 | 1.00[EUR][1000 genomes] |
| rs780781 | 0.81[AFR][1000 genomes] |
| rs780782 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv5294 | chr6:49816788-49853346 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
