Variant report

Variant	rs185700375
Chromosome Location	chrX:31453823-31453824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chrX:31453690-31454125	H1-hESC	embryonic stem cell:	n/a	n/a
2	MYC	chrX:31453657-31453987	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chrX:31453713-31454074	H1-neurons	neurons:	n/a	n/a
4	JUN	chrX:31453749-31454014	H1-hESC	embryonic stem cell:	n/a	n/a
5	USF1	chrX:31453658-31453972	H1-hESC	embryonic stem cell:	n/a	n/a
6	GTF2F1	chrX:31453672-31453845	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAX	chrX:31453643-31454059	H1-hESC	embryonic stem cell:	n/a	n/a
8	KAP1	chrX:31453646-31454142	HEK293	kidney:	n/a	n/a
9	YY1	chrX:31453628-31454032	H1-hESC	embryonic stem cell:	n/a	n/a
10	ZNF143	chrX:31453657-31454099	H1-hESC	embryonic stem cell:	n/a	chrX:31453843-31453862
11	RAD21	chrX:31453719-31454053	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chrX:31453656-31454076	H1-hESC	embryonic stem cell:	n/a	n/a
13	TEAD4	chrX:31453640-31453984	H1-hESC	embryonic stem cell:	n/a	chrX:31453782-31453791
14	USF1	chrX:31453618-31454028	H1-hESC	embryonic stem cell:	n/a	n/a
15	TEAD4	chrX:31453660-31454039	H1-hESC	embryonic stem cell:	n/a	chrX:31453782-31453791
16	NANOG	chrX:31453754-31453968	H1-hESC	embryonic stem cell:	n/a	chrX:31453901-31453910
17	MAX	chrX:31453662-31454072	H1-hESC	embryonic stem cell:	n/a	n/a
18	TAF1	chrX:31453682-31453933	H1-hESC	embryonic stem cell:	n/a	n/a
19	MAX	chrX:31453618-31454028	H1-hESC	embryonic stem cell:	n/a	n/a
20	SP1	chrX:31453707-31454051	H1-hESC	embryonic stem cell:	n/a	chrX:31453977-31453987 chrX:31453976-31453988 chrX:31453977-31453986 chrX:31453976-31453988 chrX:31453978-31453987 chrX:31453978-31453987
21	POLR2A	chrX:31453624-31454088	H1-hESC	embryonic stem cell:	n/a	n/a
22	YY1	chrX:31453640-31454110	H1-hESC	embryonic stem cell:	n/a	n/a
23	TCF7L2	chrX:31453374-31454227	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
DMD	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758567	chrX:31363616-31519148	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3447095	chrX:31441731-31519629	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv818022	chrX:31446803-31481035	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv491930	chrX:31449215-31543991	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31452600-31454400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chrX:31452600-31454800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chrX:31452800-31454000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chrX:31453000-31454800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chrX:31453000-31455000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chrX:31453200-31454400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chrX:31453200-31454800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chrX:31453200-31455000	Enhancers	HepG2	liver
9	chrX:31453600-31454000	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chrX:31453600-31454800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chrX:31453800-31454200	Active TSS	Brain Hippocampus Middle	brain
12	chrX:31453800-31454200	Enhancers	Fetal Brain Male	brain
13	chrX:31453800-31454200	Enhancers	Fetal Kidney	kidney
14	chrX:31453800-31454200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chrX:31453800-31454800	Enhancers	Fetal Intestine Small	intestine

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