Variant report

Variant	rs1857101
Chromosome Location	chr9:14019896-14019897
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16931055	1.00[EUR][1000 genomes]
rs16931087	1.00[EUR][1000 genomes]
rs16931189	1.00[EUR][1000 genomes]
rs16931234	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16931250	1.00[EUR][1000 genomes]
rs16931252	1.00[EUR][1000 genomes]
rs7036959	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13994000-14027000	Weak transcription	Aorta	Aorta
2	chr9:14014000-14022000	Weak transcription	Left Ventricle	heart
3	chr9:14014000-14022000	Weak transcription	Psoas Muscle	Psoas
4	chr9:14014000-14027000	Weak transcription	Right Atrium	heart
5	chr9:14015400-14027000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:14018400-14020000	Weak transcription	Fetal Heart	heart
7	chr9:14018600-14021600	Weak transcription	Fetal Lung	lung
8	chr9:14018600-14022000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:14018600-14022000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:14019800-14020000	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links