Variant report

Variant	rs185732691
Chromosome Location	chr1:78607454-78607455
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv1850497	chr1:78596312-78645701	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3348609	chr1:78607051-78607824	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3352364	chr1:78607054-78607825	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78555400-78608600	Weak transcription	Pancreas	Pancrea
2	chr1:78580200-78608600	Weak transcription	HepG2	liver
3	chr1:78584200-78630600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:78586400-78608600	Weak transcription	Colonic Mucosa	Colon
5	chr1:78603000-78608400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:78603200-78609000	Weak transcription	Fetal Stomach	stomach
7	chr1:78603400-78608400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:78606200-78608000	Enhancers	Fetal Intestine Small	intestine
9	chr1:78607200-78607800	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr1:78607200-78608000	Enhancers	Duodenum Mucosa	Duodenum
11	chr1:78607200-78609600	Enhancers	Fetal Intestine Large	intestine
12	chr1:78607200-78609600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr1:78607200-78609800	Enhancers	Small Intestine	intestine
14	chr1:78607400-78608000	Flanking Active TSS	Liver	Liver
15	chr1:78607400-78608000	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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