Variant report

Variant	rs185747252
Chromosome Location	chr2:20549771-20549772
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20525204..20529381-chr2:20546645..20551782,7	K562	blood:
2	chr2:20099437..20102980-chr2:20547960..20551663,4	K562	blood:
3	chr2:20549379..20553875-chr2:20644345..20648832,13	MCF-7	breast:
4	chr2:20523318..20529381-chr2:20544822..20552572,11	K562	blood:
5	chr2:20548847..20552407-chr2:20645405..20649585,5	MCF-7	breast:
6	chr2:20549000..20550935-chr2:20649579..20652329,2	MCF-7	breast:
7	chr2:20549505..20552081-chr2:20849266..20851365,2	MCF-7	breast:
8	chr11:65685171..65687731-chr2:20547276..20549842,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000228950	Chromatin interaction
ENSG00000143878	Chromatin interaction
ENSG00000118960	Chromatin interaction
ENSG00000183891	Chromatin interaction
ENSG00000055917	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000175573	Chromatin interaction
ENSG00000271991	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3423314	chr2:20549496-20552044	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20546800-20549800	Weak transcription	Spleen	Spleen
2	chr2:20547400-20550000	Flanking Active TSS	Primary T cells from cord blood	blood
3	chr2:20547600-20551800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:20547800-20550000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:20547800-20551400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:20548200-20549800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr2:20548200-20549800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:20548200-20549800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr2:20548200-20549800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr2:20548200-20549800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:20548200-20549800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:20548200-20550800	Active TSS	Stomach Smooth Muscle	stomach
13	chr2:20548400-20549800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:20548400-20549800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr2:20548400-20551000	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr2:20548400-20551000	Active TSS	Colonic Mucosa	Colon
17	chr2:20548400-20551000	Active TSS	Fetal Intestine Large	intestine
18	chr2:20548400-20551200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:20548400-20551600	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr2:20548600-20549800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr2:20548600-20549800	Weak transcription	Pancreas	Pancrea
22	chr2:20548600-20550800	Active TSS	Placenta	Placenta
23	chr2:20548600-20551000	Active TSS	H1 Cell Line	embryonic stem cell
24	chr2:20548600-20551000	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr2:20548600-20551000	Active TSS	A549	lung
26	chr2:20548600-20551000	Active TSS	K562	blood
27	chr2:20548600-20551200	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr2:20548600-20551200	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr2:20548600-20551200	Active TSS	Fetal Intestine Small	intestine
30	chr2:20548600-20551200	Active TSS	Fetal Thymus	thymus
31	chr2:20548600-20551400	Active TSS	Right Ventricle	heart
32	chr2:20548600-20551600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:20548600-20551600	Active TSS	Ovary	ovary
34	chr2:20548600-20551800	Active TSS	Thymus	Thymus
35	chr2:20548800-20549800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr2:20548800-20549800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:20548800-20549800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr2:20548800-20550000	Flanking Active TSS	Primary hematopoietic stem cells	blood
39	chr2:20548800-20550000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr2:20548800-20550000	Active TSS	Right Atrium	heart
41	chr2:20548800-20550200	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr2:20548800-20550800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:20548800-20551000	Active TSS	Primary T cells fromperipheralblood	blood
44	chr2:20548800-20551000	Active TSS	Fetal Brain Female	brain
45	chr2:20548800-20551000	Active TSS	Fetal Muscle Leg	muscle
46	chr2:20548800-20551000	Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr2:20548800-20551200	Active TSS	Fetal Lung	lung
48	chr2:20548800-20551200	Active TSS	NHDF-Ad	bronchial
49	chr2:20548800-20551400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr2:20548800-20551400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links