The 2.0 version of rSNPBase

Variant report

Variant rs185796088
Chromosome Location chr10:98047314-98047315
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:98043400-98047400 Weak transcription Placenta Amnion Placenta Amnion
2 chr10:98044800-98047400 Enhancers Primary B cells from peripheral blood blood
3 chr10:98044800-98047400 Enhancers Fetal Intestine Large intestine
4 chr10:98045000-98047400 Enhancers Sigmoid Colon Sigmoid Colon
5 chr10:98045200-98047400 Enhancers Fetal Intestine Small intestine
6 chr10:98045400-98048000 Weak transcription Gastric stomach
7 chr10:98045400-98048200 Enhancers Colonic Mucosa Colon
8 chr10:98045600-98047600 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr10:98045600-98049800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr10:98045600-98052800 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr10:98045600-98053000 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr10:98046200-98047400 Enhancers Pancreas Pancrea
13 chr10:98046200-98048400 Enhancers Breast Myoepithelial Primary Cells Breast
14 chr10:98046400-98047400 Flanking Active TSS GM12878-XiMat blood
15 chr10:98046400-98047600 Flanking Active TSS Primary B cells from cord blood blood
16 chr10:98046400-98047600 Enhancers Stomach Mucosa stomach
17 chr10:98046400-98047800 Enhancers Colon Smooth Muscle Colon
18 chr10:98046400-98048600 Enhancers Dnd41 blood
19 chr10:98046600-98047400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr10:98046600-98047600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr10:98046600-98048200 Enhancers Primary Natural Killer cells fromperipheralblood blood
22 chr10:98046600-98050800 Enhancers Fetal Thymus thymus
23 chr10:98046800-98047400 Enhancers Primary hematopoietic stem cells blood
24 chr10:98046800-98047400 Enhancers Thymus Thymus
25 chr10:98046800-98049400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr10:98047000-98047400 Enhancers Esophagus oesophagus
27 chr10:98047000-98047400 Enhancers Fetal Stomach stomach
28 chr10:98047000-98047400 Flanking Active TSS Rectal Mucosa Donor 29 rectum
29 chr10:98047000-98047400 Enhancers Skeletal Muscle Female skeletal muscle
30 chr10:98047000-98047600 Enhancers ES-I3 Cell Line embryonic stem cell
31 chr10:98047000-98047600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr10:98047000-98047600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr10:98047000-98047600 Enhancers Primary T helper naive cells fromperipheralblood blood
34 chr10:98047000-98047600 Flanking Active TSS Duodenum Mucosa Duodenum
35 chr10:98047000-98047600 Enhancers Small Intestine intestine
36 chr10:98047000-98047800 Enhancers Primary T helper naive cells from peripheral blood blood
37 chr10:98047000-98048000 Enhancers Rectal Smooth Muscle rectum
38 chr10:98047000-98048200 Enhancers Fetal Lung lung
39 chr10:98047000-98048200 Enhancers NHEK skin
40 chr10:98047000-98048400 Enhancers Primary T helper cells PMA-I stimulated --
41 chr10:98047000-98048400 Enhancers HMEC breast
42 chr10:98047000-98048600 Enhancers Primary T helper cells fromperipheralblood blood
43 chr10:98047000-98050400 Enhancers Placenta Placenta
44 chr10:98047200-98047400 Active TSS Fetal Kidney kidney
45 chr10:98047200-98047400 Enhancers Spleen Spleen
46 chr10:98047200-98047600 Flanking Active TSS Liver Liver
47 chr10:98047200-98047600 Flanking Active TSS Rectal Mucosa Donor 31 rectum
48 chr10:98047200-98047800 Flanking Active TSS HepG2 liver
49 chr10:98047200-98048200 Enhancers Primary hematopoietic stem cells short term culture blood
50 chr10:98047200-98048200 Enhancers Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015