Variant report

Variant	rs1857974
Chromosome Location	chr3:78740303-78740304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1025946	1.00[CEU][hapmap]
rs1507419	1.00[CEU][hapmap]
rs2217924	1.00[ASN][1000 genomes]
rs2684376	1.00[AMR][1000 genomes]
rs3773194	1.00[CEU][hapmap]
rs3773205	0.87[EUR][1000 genomes]
rs3773235	1.00[AMR][1000 genomes]
rs3821597	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3821598	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3931978	0.83[AMR][1000 genomes]
rs57507909	0.85[EUR][1000 genomes]
rs58872086	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60505291	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008156	chr3:78444137-78765884	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78654200-78746600	Weak transcription	NHDF-Ad	bronchial
2	chr3:78667200-78751200	Weak transcription	Esophagus	oesophagus
3	chr3:78717800-78745200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:78717800-78748400	Weak transcription	Ovary	ovary
5	chr3:78719600-78753000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:78720000-78753200	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:78730400-78752600	Weak transcription	Fetal Stomach	stomach
8	chr3:78733800-78744600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:78733800-78746600	Weak transcription	Fetal Lung	lung
10	chr3:78733800-78752400	Weak transcription	Fetal Kidney	kidney
11	chr3:78733800-78778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:78735200-78765600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:78737400-78741200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:78739000-78741800	Weak transcription	HepG2	liver
15	chr3:78739600-78740400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:78739600-78740400	Enhancers	Brain Germinal Matrix	brain
17	chr3:78739600-78740600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:78739600-78740600	Enhancers	Osteobl	bone
19	chr3:78739800-78740600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:78740000-78740600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:78740200-78740400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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