Variant report

Variant	rs1858182
Chromosome Location	chr1:176197291-176197292
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10913130	1.00[AMR][1000 genomes]
rs2455763	1.00[AMR][1000 genomes]
rs2481638	1.00[AMR][1000 genomes]
rs2502846	1.00[AMR][1000 genomes]
rs3979615	1.00[AMR][1000 genomes]
rs4147203	1.00[AMR][1000 genomes]
rs7551432	1.00[AMR][1000 genomes]
rs812066	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
3	chr1:176194000-176197600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:176196600-176197600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:176197000-176198400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:176197000-176201800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:176197200-176199000	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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