Variant report

Variant	rs1858611
Chromosome Location	chr10:95970547-95970548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10509669	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:95959600-95972400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:95959800-95970600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:95959800-95972800	Weak transcription	A549	lung
7	chr10:95960000-95991800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:95960800-95970800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:95962600-95973600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:95965200-95972600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:95965800-95972800	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:95966200-95970600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:95966600-95987000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:95967000-95970600	Weak transcription	Small Intestine	intestine
15	chr10:95967000-95972400	Weak transcription	Liver	Liver
16	chr10:95967400-95988000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:95968000-95971800	Enhancers	Fetal Lung	lung
18	chr10:95968800-95972600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:95968800-95972800	Weak transcription	NHLF	lung
20	chr10:95969400-95971800	Enhancers	Fetal Stomach	stomach
21	chr10:95969600-95970600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:95969600-95971200	Enhancers	Adipose Nuclei	Adipose
23	chr10:95969600-95971200	Enhancers	Ovary	ovary
24	chr10:95969600-95974200	Enhancers	HSMMtube	muscle
25	chr10:95969600-95974400	Enhancers	Fetal Muscle Leg	muscle
26	chr10:95969800-95971200	Enhancers	Fetal Heart	heart
27	chr10:95970000-95971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:95970200-95971000	Enhancers	Fetal Kidney	kidney
29	chr10:95970200-95971000	Enhancers	Right Ventricle	heart
30	chr10:95970200-95971200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:95970200-95971200	Enhancers	Fetal Muscle Trunk	muscle
32	chr10:95970200-95971200	Enhancers	Left Ventricle	heart
33	chr10:95970200-95971200	Enhancers	Lung	lung
34	chr10:95970200-95971200	Enhancers	Pancreas	Pancrea
35	chr10:95970200-95971200	Enhancers	Spleen	Spleen
36	chr10:95970200-95971200	Enhancers	HepG2	liver
37	chr10:95970200-95971200	Enhancers	HSMM	muscle
38	chr10:95970200-95971400	Enhancers	Stomach Smooth Muscle	stomach
39	chr10:95970200-95971600	Enhancers	Psoas Muscle	Psoas
40	chr10:95970200-95973200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr10:95970400-95971000	Enhancers	Gastric	stomach
42	chr10:95970400-95971200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:95970400-95971200	Strong transcription	Fetal Intestine Small	intestine
44	chr10:95970400-95971200	Enhancers	Right Atrium	heart
45	chr10:95970400-95971600	Enhancers	Aorta	Aorta

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