Variant report

Variant	rs185935299
Chromosome Location	chr6:150182966-150182967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150181876-150186422	IMR90	lung:	n/a	n/a
2	CEBPB	chr6:150181851-150183198	HepG2	liver:	n/a	chr6:150182705-150182716
3	POLR2A	chr6:150182638-150183256	Hela-S3	cervix:	n/a	n/a
4	CHD1	chr6:150181747-150185902	IMR90	lung:	n/a	chr6:150185305-150185315
5	RAD21	chr6:150182415-150182990	HCT-116	colon:	n/a	n/a
6	POLR2A	chr6:150182258-150182968	MCF10A-Er-Src	breast:	n/a	n/a
7	TEAD4	chr6:150181746-150183001	HepG2	liver:	n/a	n/a
8	POLR2A	chr6:150181143-150183681	HepG2	liver:	n/a	n/a
9	MAFK	chr6:150182648-150183826	IMR90	lung:	n/a	chr6:150183213-150183224 chr6:150183651-150183666
10	CEBPB	chr6:150182407-150182968	A549	lung:	n/a	chr6:150182705-150182716
11	CEBPB	chr6:150182485-150183266	IMR90	lung:	n/a	chr6:150182705-150182716
12	POLR2A	chr6:150181811-150186475	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr6:150180156-150183754	HepG2	liver:	n/a	n/a
14	MYBL2	chr6:150181690-150183025	HepG2	liver:	n/a	n/a
15	RCOR1	chr6:150181811-150183013	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:150037075..150038991-chr6:150181496..150184249,2	K562	blood:
2	chr6:150161791..150162424-chr6:150182291..150183108,3	MCF-7	breast:
3	chr6:150181490..150187274-chr6:150243970..150248410,8	MCF-7	breast:
4	chr6:150155308..150156178-chr6:150182507..150183228,2	MCF-7	breast:
5	chr6:150036146..150038991-chr6:150182749..150185016,3	K562	blood:
6	chr6:150180705..150183477-chr6:150200209..150201991,2	K562	blood:

Variant related genes	Relation type
ENSG00000268592	TF binding region
ENSG00000217733	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000203722	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3437961	chr6:150182459-150187257	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150168800-150183400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:150169200-150183000	Weak transcription	Brain Substantia Nigra	brain
3	chr6:150169400-150183200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:150173000-150184200	Weak transcription	Aorta	Aorta
5	chr6:150173200-150183200	Weak transcription	Ovary	ovary
6	chr6:150176200-150183200	Weak transcription	Fetal Intestine Large	intestine
7	chr6:150176600-150183200	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:150176600-150183400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:150176800-150183400	Weak transcription	HSMMtube	muscle
10	chr6:150177200-150183000	Weak transcription	Fetal Kidney	kidney
11	chr6:150177600-150183000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:150177600-150183200	Weak transcription	Fetal Lung	lung
13	chr6:150178000-150183200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:150178000-150183200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:150178600-150184000	Weak transcription	Psoas Muscle	Psoas
16	chr6:150178800-150183400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:150179000-150183200	Weak transcription	HSMM	muscle
18	chr6:150179600-150183200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:150180200-150183400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:150180600-150183200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:150180600-150183600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:150180600-150183600	Enhancers	Gastric	stomach
23	chr6:150180600-150184200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:150180800-150183200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:150181200-150183000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:150181200-150183600	Enhancers	Esophagus	oesophagus
27	chr6:150181200-150183800	Enhancers	Fetal Muscle Leg	muscle
28	chr6:150181200-150183800	Enhancers	Placenta	Placenta
29	chr6:150181200-150183800	Enhancers	Pancreas	Pancrea
30	chr6:150181200-150183800	Flanking Active TSS	Hela-S3	cervix
31	chr6:150181200-150184000	Enhancers	Liver	Liver
32	chr6:150181400-150183000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:150181400-150183400	Enhancers	HMEC	breast
34	chr6:150181600-150183000	Flanking Active TSS	A549	lung
35	chr6:150181600-150183200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:150181600-150183400	Strong transcription	Fetal Stomach	stomach
37	chr6:150181800-150183000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:150181800-150183200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
39	chr6:150181800-150183200	Enhancers	Brain Hippocampus Middle	brain
40	chr6:150181800-150183800	Enhancers	Adipose Nuclei	Adipose
41	chr6:150181800-150183800	Enhancers	Brain Germinal Matrix	brain
42	chr6:150182000-150183000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:150182000-150183000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:150182000-150183000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:150182000-150183000	Genic enhancers	Stomach Smooth Muscle	stomach
46	chr6:150182000-150183200	Enhancers	NHDF-Ad	bronchial
47	chr6:150182000-150183200	Genic enhancers	NHLF	lung
48	chr6:150182000-150183400	Enhancers	Lung	lung
49	chr6:150182000-150183400	Enhancers	NH-A	brain
50	chr6:150182000-150184000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links