The 2.0 version of rSNPBase

Variant report

Variant rs185945220
Chromosome Location chr1:161055738-161055739
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161039600-161066800 Weak transcription Right Atrium heart
2 chr1:161049400-161056400 Enhancers HMEC breast
3 chr1:161049400-161056600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:161050000-161057800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:161050200-161055800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:161051000-161055800 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr1:161052200-161058400 Enhancers Pancreas Pancrea
8 chr1:161052400-161057000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:161052600-161055800 Enhancers HSMM muscle
10 chr1:161052600-161056200 Enhancers Rectal Mucosa Donor 31 rectum
11 chr1:161052600-161056400 Enhancers K562 blood
12 chr1:161052600-161056600 Enhancers Fetal Intestine Large intestine
13 chr1:161052800-161055800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:161052800-161056400 Enhancers HUES6 Cell Line embryonic stem cell
15 chr1:161053000-161056200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr1:161053000-161056800 Enhancers ES-I3 Cell Line embryonic stem cell
17 chr1:161053200-161059200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:161053400-161058600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr1:161053600-161057400 Flanking Active TSS Placenta Placenta
20 chr1:161053600-161058800 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:161053600-161063600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr1:161053800-161056000 Enhancers Hela-S3 cervix
23 chr1:161053800-161056800 Enhancers NHEK skin
24 chr1:161054200-161056000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:161054200-161056000 Weak transcription Lung lung
26 chr1:161054200-161058800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr1:161054400-161056000 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:161054400-161056000 Enhancers Stomach Mucosa stomach
29 chr1:161054400-161056800 Weak transcription iPS-20b Cell Line embryonic stem cell
30 chr1:161054600-161056600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr1:161054600-161057800 Weak transcription Primary monocytes fromperipheralblood blood
32 chr1:161054600-161057800 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr1:161054800-161056200 Enhancers HUES64 Cell Line embryonic stem cell
34 chr1:161055000-161056000 Weak transcription Colonic Mucosa Colon
35 chr1:161055000-161056200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr1:161055000-161056800 Enhancers Duodenum Mucosa Duodenum
37 chr1:161055000-161057200 Enhancers Placenta Amnion Placenta Amnion
38 chr1:161055000-161058400 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr1:161055000-161058400 Weak transcription Gastric stomach
40 chr1:161055200-161056400 Bivalent Enhancer HepG2 liver
41 chr1:161055200-161058400 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr1:161055200-161064600 Weak transcription Fetal Lung lung
43 chr1:161055400-161055800 Weak transcription H1 Cell Line embryonic stem cell
44 chr1:161055400-161056200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
45 chr1:161055400-161056200 Weak transcription Fetal Intestine Small intestine
46 chr1:161055400-161057800 Weak transcription NHDF-Ad bronchial
47 chr1:161055400-161058000 Weak transcription Osteobl bone
48 chr1:161055400-161058200 Weak transcription A549 lung
49 chr1:161055400-161058200 Weak transcription NH-A brain
50 chr1:161055400-161058200 Weak transcription NHLF lung

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Last update: Aug 31, 2015