Variant report

Variant	rs185954838
Chromosome Location	chr3:17232007-17232008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17209153..17211892-chr3:17230634..17232941,2	K562	blood:
2	chr3:17223218..17225620-chr3:17228660..17232430,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589841	chr3:17214070-17290465	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876589	chr3:17230884-17346355	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17201200-17236200	Weak transcription	Fetal Brain Male	brain
2	chr3:17203800-17244200	Weak transcription	Colonic Mucosa	Colon
3	chr3:17208200-17244000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:17208400-17243800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:17208400-17244000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:17208800-17234400	Weak transcription	Brain Angular Gyrus	brain
7	chr3:17209000-17234000	Weak transcription	Brain Substantia Nigra	brain
8	chr3:17209600-17234000	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:17209600-17236800	Weak transcription	Gastric	stomach
10	chr3:17210000-17244000	Weak transcription	Esophagus	oesophagus
11	chr3:17215600-17236800	Weak transcription	Pancreas	Pancrea
12	chr3:17217600-17242600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:17217800-17234200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:17218000-17243800	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:17218600-17236800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:17221000-17236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:17221600-17232600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:17221600-17243200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr3:17221600-17244000	Weak transcription	Thymus	Thymus
20	chr3:17221600-17295800	Weak transcription	HSMM	muscle
21	chr3:17221800-17232400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:17223800-17236600	Weak transcription	Fetal Brain Female	brain
23	chr3:17224000-17243400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:17224000-17243800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr3:17224000-17244000	Weak transcription	Aorta	Aorta
26	chr3:17224600-17233200	Weak transcription	Small Intestine	intestine
27	chr3:17224800-17243800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr3:17224800-17243800	Weak transcription	Placenta	Placenta
29	chr3:17225400-17232400	Weak transcription	Primary T cells from cord blood	blood
30	chr3:17225400-17236800	Weak transcription	Fetal Stomach	stomach
31	chr3:17225400-17244000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:17225600-17236800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:17225600-17240200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:17225600-17256000	Weak transcription	HepG2	liver
35	chr3:17225800-17233800	Weak transcription	NHEK	skin
36	chr3:17225800-17236400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:17225800-17236600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:17225800-17236600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr3:17225800-17237600	Weak transcription	NHLF	lung
40	chr3:17225800-17243600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr3:17225800-17254800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:17226000-17236400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:17226000-17236800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:17226400-17236600	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr3:17226400-17243400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr3:17226400-17243600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:17226400-17243800	Weak transcription	Fetal Intestine Small	intestine
48	chr3:17226400-17243800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr3:17226600-17236600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr3:17226600-17236800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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