Variant report

Variant	rs185956879
Chromosome Location	chr10:54068693-54068694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:54065577..54083492-chr10:54193846..54218961,120	MCF-7	breast:
2	chr10:54064374..54069621-chr10:54325572..54329506,5	MCF-7	breast:
3	chr10:54060116..54061619-chr10:54068153..54070919,2	MCF-7	breast:
4	chr10:54068229..54070730-chr10:54076005..54078630,2	K562	blood:
5	chr10:53145130..53146653-chr10:54068648..54071560,2	K562	blood:
6	chr10:54068053..54070294-chr10:54245844..54248114,2	MCF-7	breast:
7	chr10:54067639..54070008-chr10:54219109..54220773,2	MCF-7	breast:
8	chr10:54068619..54069176-chr10:54326482..54327373,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000236671	Chromatin interaction
ENSG00000231131	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv275139	chr10:54065821-54069336	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3501174	chr10:54068626-54069297	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3501285	chr10:54068629-54069243	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54068000-54068800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:54068000-54068800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:54068000-54068800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
4	chr10:54068000-54068800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr10:54068000-54068800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:54068000-54068800	Active TSS	Brain Angular Gyrus	brain
7	chr10:54068000-54068800	Bivalent/Poised TSS	Fetal Stomach	stomach
8	chr10:54068000-54068800	Active TSS	Right Ventricle	heart
9	chr10:54068000-54068800	Active TSS	HSMMtube	muscle
10	chr10:54068000-54068800	Active TSS	NH-A	brain
11	chr10:54068000-54069000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:54068000-54069000	Active TSS	Brain Anterior Caudate	brain
13	chr10:54068000-54069000	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr10:54068200-54068800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:54068200-54068800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr10:54068200-54068800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:54068200-54068800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr10:54068200-54068800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr10:54068200-54068800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:54068200-54068800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr10:54068200-54068800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:54068200-54068800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:54068200-54068800	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr10:54068200-54068800	Bivalent/Poised TSS	Primary B cells from cord blood	blood
25	chr10:54068200-54068800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:54068200-54068800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr10:54068200-54068800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:54068200-54068800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:54068200-54068800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:54068200-54068800	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr10:54068200-54068800	Active TSS	Aorta	Aorta
32	chr10:54068200-54068800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
33	chr10:54068200-54068800	Active TSS	Brain Hippocampus Middle	brain
34	chr10:54068200-54068800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:54068200-54068800	Active TSS	Brain Substantia Nigra	brain
36	chr10:54068200-54068800	Active TSS	Colon Smooth Muscle	Colon
37	chr10:54068200-54068800	Bivalent/Poised TSS	Esophagus	oesophagus
38	chr10:54068200-54068800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
39	chr10:54068200-54068800	Active TSS	Fetal Kidney	kidney
40	chr10:54068200-54068800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr10:54068200-54068800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
42	chr10:54068200-54068800	Active TSS	Gastric	stomach
43	chr10:54068200-54068800	Enhancers	Lung	lung
44	chr10:54068200-54068800	Flanking Active TSS	Pancreas	Pancrea
45	chr10:54068200-54068800	Active TSS	Placenta Amnion	Placenta Amnion
46	chr10:54068200-54068800	Active TSS	Right Atrium	heart
47	chr10:54068200-54068800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
48	chr10:54068200-54068800	Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr10:54068200-54068800	Active TSS	Stomach Smooth Muscle	stomach
50	chr10:54068200-54068800	Enhancers	Spleen	Spleen

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