Variant report

Variant	rs1859702
Chromosome Location	chr7:41105832-41105833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10216075	0.84[EUR][1000 genomes]
rs10244205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765348	0.89[ASN][1000 genomes]
rs11974873	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13236299	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2190345	0.99[ASN][1000 genomes]
rs6968769	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1859702	URGCP	cis	parietal	SCAN
rs1859702	C17orf104	trans	cerebellum	SCAN
rs1859702	MRPS22	trans	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41101000-41113000	Weak transcription	Aorta	Aorta
2	chr7:41101000-41117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:41104600-41106000	Enhancers	HMEC	breast
4	chr7:41104600-41106400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:41104800-41106000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:41104800-41106400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:41105200-41106000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:41105400-41106000	Enhancers	Esophagus	oesophagus
9	chr7:41105600-41106000	Flanking Active TSS	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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