Variant report

Variant	rs1859772
Chromosome Location	chr7:108103984-108103985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:108102855..108105698-chr7:108109300..108111309,2	K562	blood:
2	chr7:108102620..108104801-chr7:108107037..108108765,2	K562	blood:
3	chr7:108102278..108104184-chr7:108111480..108113045,2	MCF-7	breast:
4	chr7:108094678..108098834-chr7:108103652..108107753,7	MCF-7	breast:
5	chr7:108092671..108095154-chr7:108102924..108105484,2	MCF-7	breast:
6	chr7:108092620..108097023-chr7:108100316..108104112,6	K562	blood:
7	chr7:107819408..107821670-chr7:108103371..108105401,2	K562	blood:
8	chr7:108103332..108105675-chr7:108106936..108109038,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000091129	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10273997	1.00[CEU][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10278246	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1034825	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs1034829	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs13244602	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1473131	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17339110	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1859769	0.94[EUR][1000 genomes]
rs1859771	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1859774	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1859775	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs194585	0.96[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs194586	0.96[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2214916	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2284291	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs2284292	0.85[EUR][1000 genomes]
rs2300053	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs2396001	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3763462	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3815252	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs40846	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs40849	1.00[CEU][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs40856	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs40890	0.94[EUR][1000 genomes]
rs40903	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes]
rs40927	0.83[YRI][hapmap]
rs6466239	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6466240	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6966431	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6976478	0.89[EUR][1000 genomes]
rs726471	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73426110	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7800334	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7806223	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917251	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs9640707	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9785006	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108097200-108118000	Weak transcription	Aorta	Aorta
2	chr7:108098200-108140600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:108100400-108106600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr7:108100800-108108800	Weak transcription	HUVEC	blood vessel
5	chr7:108101000-108119200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:108101400-108116800	Weak transcription	Osteobl	bone
7	chr7:108101800-108108400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:108102200-108106800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr7:108102400-108129600	Weak transcription	Pancreas	Pancrea
10	chr7:108102400-108137000	Weak transcription	NH-A	brain
11	chr7:108102400-108143600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:108102600-108116000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:108102600-108118200	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:108102800-108104000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr7:108102800-108105000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:108102800-108107000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:108102800-108111000	Weak transcription	HSMM	muscle
18	chr7:108102800-108111200	Weak transcription	Adipose Nuclei	Adipose
19	chr7:108102800-108126400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:108102800-108158400	Weak transcription	HSMMtube	muscle
21	chr7:108103000-108111200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:108103200-108105600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr7:108103200-108115200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:108103400-108105800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr7:108103600-108105800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr7:108103800-108104400	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr7:108103800-108104800	Enhancers	Dnd41	blood
28	chr7:108103800-108105600	Enhancers	Thymus	Thymus

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