Variant report

Variant	rs186083828
Chromosome Location	chr17:37864527-37864528
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr17:37864266-37864786	MCF-7	breast:	n/a	n/a
2	POLR2A	chr17:37864505-37864671	H1-hESC	embryonic stem cell:	n/a	n/a
3	GATA3	chr17:37864239-37864655	T-47D	breast:	n/a	n/a
4	GATA3	chr17:37864249-37864533	MCF-7	breast:	n/a	n/a
5	GATA3	chr17:37864231-37864715	MCF-7	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37844202..37845987-chr17:37862738..37864585,2	K562	blood:
2	chr17:37862394..37865054-chr17:37882153..37884156,2	K562	blood:
3	chr17:37815487..37818092-chr17:37864402..37866827,2	MCF-7	breast:
4	chr17:37861753..37864572-chr17:37866139..37867731,2	MCF-7	breast:
5	chr17:37843168..37845541-chr17:37863729..37866216,2	MCF-7	breast:
6	chr17:37864069..37866883-chr17:37884219..37886655,3	MCF-7	breast:
7	chr17:37852050..37854882-chr17:37862447..37865325,2	K562	blood:
8	chr17:37860636..37865251-chr17:37890921..37895460,5	MCF-7	breast:

No data

Variant related genes	Relation type
ERBB2	TF binding region
ENSG00000131748	Chromatin interaction
ENSG00000265178	Chromatin interaction
ENSG00000141736	Chromatin interaction
ENSG00000161395	Chromatin interaction
ENSG00000141738	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv908206	chr17:37709422-37866005	Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv833443	chr17:37725640-37882864	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	esv1792029	chr17:37797757-37886460	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv528093	chr17:37814080-37866005	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1056234	chr17:37862605-37909988	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv908216	chr17:37863015-37879588	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	nsv908217	chr17:37863708-37879588	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37857000-37872000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr17:37858000-37885200	Weak transcription	Fetal Brain Male	brain
3	chr17:37858000-37885600	Weak transcription	Hela-S3	cervix
4	chr17:37858200-37882600	Weak transcription	NHDF-Ad	bronchial
5	chr17:37858400-37879600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr17:37859400-37881000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr17:37859800-37864800	Weak transcription	Fetal Brain Female	brain
8	chr17:37861200-37864600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr17:37861400-37883600	Weak transcription	Brain Substantia Nigra	brain
10	chr17:37861600-37864600	Weak transcription	Colon Smooth Muscle	Colon
11	chr17:37862000-37865400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:37862200-37866600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr17:37862200-37877000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
14	chr17:37862200-37885200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr17:37862400-37876800	Strong transcription	HepG2	liver
16	chr17:37862400-37877600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:37862400-37878800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr17:37862400-37885400	Strong transcription	H9 Cell Line	embryonic stem cell
19	chr17:37862400-37885600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:37862400-37885600	Strong transcription	Fetal Stomach	stomach
21	chr17:37862400-37885800	Weak transcription	Right Atrium	heart
22	chr17:37862600-37866000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr17:37862600-37866200	Genic enhancers	Placenta	Placenta
24	chr17:37862600-37866800	Genic enhancers	Fetal Muscle Trunk	muscle
25	chr17:37862600-37871400	Weak transcription	HSMM	muscle
26	chr17:37862600-37871600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr17:37862600-37885600	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr17:37862800-37864600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr17:37862800-37865400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr17:37862800-37866600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr17:37862800-37872000	Weak transcription	NH-A	brain
32	chr17:37862800-37878800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr17:37862800-37883200	Weak transcription	Small Intestine	intestine
34	chr17:37862800-37885600	Strong transcription	Fetal Intestine Large	intestine
35	chr17:37863000-37864600	Enhancers	Fetal Thymus	thymus
36	chr17:37863000-37864800	Genic enhancers	Colonic Mucosa	Colon
37	chr17:37863000-37865400	Weak transcription	Brain Germinal Matrix	brain
38	chr17:37863000-37868800	Strong transcription	A549	lung
39	chr17:37863000-37869400	Strong transcription	Adipose Nuclei	Adipose
40	chr17:37863000-37870000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr17:37863000-37872400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr17:37863000-37873800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr17:37863000-37876600	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr17:37863000-37877000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr17:37863000-37878800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr17:37863000-37879000	Strong transcription	HSMMtube	muscle
47	chr17:37863000-37879600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr17:37863000-37885600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr17:37863200-37865400	Weak transcription	Brain Anterior Caudate	brain
50	chr17:37863200-37865800	Genic enhancers	Gastric	stomach

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