Variant report

Variant	rs186108232
Chromosome Location	chr16:30671148-30671149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr16:30668608-30671540	K562	blood:	n/a	chr16:30670803-30670813 chr16:30670487-30670497 chr16:30669313-30669322
2	POLR2A	chr16:30671057-30673269	GM12878	blood:	n/a	n/a
3	POLR2A	chr16:30668948-30671717	GM18951	blood:	n/a	n/a
4	POLR2A	chr16:30668093-30671519	PANC-1	pancreas:	n/a	n/a
5	FOXM1	chr16:30671090-30671400	GM12878	blood:	n/a	n/a
6	HMGN3	chr16:30670422-30671446	K562	blood:	n/a	n/a
7	POLR2A	chr16:30668870-30671538	MCF-7	breast:	n/a	n/a
8	POLR2A	chr16:30671029-30671731	GM12892	blood:	n/a	n/a
9	POLR2A	chr16:30668961-30671625	ProgFib	skin:	n/a	n/a
10	ELF1	chr16:30670948-30671212	K562	blood:	n/a	n/a
11	MAZ	chr16:30671146-30671592	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr16:30668555-30671681	HUVEC	blood vessel:	n/a	n/a
13	RELA	chr16:30671084-30672399	GM15510	blood:	n/a	chr16:30671327-30671336 chr16:30671327-30671336
14	MAX	chr16:30671003-30671474	ECC-1	luminal epithelium:	n/a	n/a
15	POLR2A	chr16:30670249-30671341	A549	lung:	n/a	n/a
16	POLR2A	chr16:30671007-30671746	U87	brain:	n/a	n/a
17	YY1	chr16:30668751-30671388	HepG2	liver:	n/a	chr16:30669304-30669318 chr16:30670751-30670765 chr16:30669221-30669235 chr16:30669304-30669313 chr16:30670800-30670814 chr16:30670969-30670989 chr16:30669348-30669362 chr16:30670802-30670811 chr16:30669306-30669315 chr16:30669227-30669241 chr16:30669298-30669312
18	ZNF263	chr16:30670932-30671621	K562	blood:	n/a	chr16:30671222-30671243 chr16:30671569-30671578 chr16:30671451-30671460
19	POLR2A	chr16:30668695-30671796	HUVEC	blood vessel:	n/a	n/a
20	POLR2A	chr16:30668106-30672800	GM12892	blood:	n/a	n/a
21	MAZ	chr16:30669071-30671312	K562	blood:	n/a	chr16:30670803-30670813 chr16:30670487-30670497 chr16:30669313-30669322
22	POLR2A	chr16:30671116-30672496	GM12891	blood:	n/a	n/a
23	YY1	chr16:30668715-30671489	GM12892	blood:	n/a	chr16:30669304-30669318 chr16:30670751-30670765 chr16:30669221-30669235 chr16:30669304-30669313 chr16:30670800-30670814 chr16:30670969-30670989 chr16:30669348-30669362 chr16:30670802-30670811 chr16:30669306-30669315 chr16:30669227-30669241 chr16:30669298-30669312
24	MTA3	chr16:30671110-30671718	GM12878	blood:	n/a	n/a
25	POLR2A	chr16:30669009-30671671	GM18526	blood:	n/a	n/a
26	PBX3	chr16:30671143-30671354	GM12878	blood:	n/a	n/a
27	POLR2A	chr16:30671095-30671614	U87	brain:	n/a	n/a
28	POLR2A	chr16:30667975-30671753	K562	blood:	n/a	n/a
29	POLR2A	chr16:30668899-30671768	GM12878	blood:	n/a	n/a
30	POLR2A	chr16:30670978-30671923	U87	brain:	n/a	n/a
31	POLR2A	chr16:30668198-30673294	GM12878	blood:	n/a	n/a
32	POLR2A	chr16:30670896-30671391	PFSK-1	brain:	n/a	n/a
33	POLR2A	chr16:30670953-30671679	GM12891	blood:	n/a	n/a
34	POLR2A	chr16:30668855-30671397	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr16:30671062-30671679	GM12891	blood:	n/a	n/a
36	RELA	chr16:30671131-30671533	GM19099	blood:	n/a	chr16:30671327-30671336 chr16:30671327-30671336
37	RCOR1	chr16:30671125-30671303	Hela-S3	cervix:	n/a	n/a
38	RELA	chr16:30671092-30672581	GM12891	blood:	n/a	chr16:30671327-30671336 chr16:30671327-30671336
39	POLR2A	chr16:30668645-30671634	MCF-7	breast:	n/a	n/a
40	POLR2A	chr16:30670984-30671822	U87	brain:	n/a	n/a
41	POLR2A	chr16:30668977-30671756	GM12892	blood:	n/a	n/a
42	SMARCB1	chr16:30668918-30671499	Hela-S3	cervix:	n/a	n/a
43	EBF1	chr16:30671079-30671918	GM12878	blood:	n/a	chr16:30671470-30671480 chr16:30671470-30671479 chr16:30671469-30671480
44	BCLAF1	chr16:30670915-30671739	GM12878	blood:	n/a	n/a
45	SIN3AK20	chr16:30670399-30671244	K562	blood:	n/a	n/a
46	POLR2A	chr16:30671074-30671290	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr16:30670859-30672818	GM12892	blood:	n/a	n/a
48	POLR2A	chr16:30670901-30671187	A549	lung:	n/a	n/a
49	POLR2A	chr16:30670308-30671388	A549	lung:	n/a	n/a
50	POLR2A	chr16:30668630-30671685	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:30669436..30672389-chr17:73774530..73776217,2	MCF-7	breast:
2	chr16:30534881..30538738-chr16:30669014..30672874,5	MCF-7	breast:
3	chr16:30382922..30384905-chr16:30669904..30671484,2	MCF-7	breast:
4	chr16:30665738..30673826-chr16:30707321..30713630,33	K562	blood:
5	chr16:30581261..30583067-chr16:30670889..30672636,2	K562	blood:
6	chr16:30620863..30623072-chr16:30670310..30671873,2	MCF-7	breast:
7	chr16:30544819..30547359-chr16:30669370..30671346,2	MCF-7	breast:
8	chr16:30665347..30684079-chr16:30697204..30714344,66	MCF-7	breast:
9	chr16:30669272..30672997-chr16:30933501..30936286,4	MCF-7	breast:
10	chr16:30668245..30671978-chr16:30750248..30754870,9	MCF-7	breast:
11	chr16:29815810..29818051-chr16:30669124..30671964,2	MCF-7	breast:
12	chr16:30583091..30585681-chr16:30668404..30671562,3	K562	blood:
13	chr16:30454464..30457358-chr16:30669384..30671896,3	K562	blood:
14	chr16:30670863..30673913-chr16:30759873..30762559,3	MCF-7	breast:
15	chr16:30669616..30672714-chr16:30750078..30754286,5	MCF-7	breast:
16	chr16:30455687..30457449-chr16:30670431..30673736,3	MCF-7	breast:
17	chr16:30581724..30584025-chr16:30669136..30672320,3	MCF-7	breast:
18	chr16:30667507..30674392-chr16:30704170..30712522,40	MCF-7	breast:
19	chr16:30625309..30627910-chr16:30669048..30671707,2	K562	blood:
20	chr16:30626674..30628950-chr16:30669542..30671226,2	MCF-7	breast:
21	chr16:30667783..30674540-chr16:30707310..30714065,38	K562	blood:
22	chr16:30389121..30392604-chr16:30668490..30671197,4	K562	blood:
23	chr16:30670901..30672764-chr20:45946982..45948705,2	MCF-7	breast:
24	chr16:30670913..30673780-chr16:30684113..30687198,4	MCF-7	breast:
25	chr16:30438691..30441643-chr16:30669537..30671666,4	MCF-7	breast:
26	chr16:30455343..30457757-chr16:30668968..30672214,3	MCF-7	breast:
27	chr16:30404931..30406633-chr16:30670446..30672250,2	MCF-7	breast:
28	chr16:30535862..30538141-chr16:30667987..30671632,3	K562	blood:
29	chr16:30345814..30348548-chr16:30669791..30672071,2	MCF-7	breast:

Variant related genes	Relation type
FBRS	TF binding region
ENSG00000180035	Chromatin interaction
ENSG00000261840	Chromatin interaction
ENSG00000180209	Chromatin interaction
ENSG00000267882	Chromatin interaction
ENSG00000080603	Chromatin interaction
ENSG00000260678	Chromatin interaction
ENSG00000099364	Chromatin interaction
ENSG00000156853	Chromatin interaction
ENSG00000103495	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000183604	Chromatin interaction
ENSG00000239791	Chromatin interaction
ENSG00000156873	Chromatin interaction
ENSG00000260852	Chromatin interaction
ENSG00000180096	Chromatin interaction
ENSG00000132475	Chromatin interaction
ENSG00000260899	Chromatin interaction
ENSG00000235560	Chromatin interaction
ENSG00000252074	Chromatin interaction
ENSG00000169955	Chromatin interaction
ENSG00000229809	Chromatin interaction
ENSG00000179918	Chromatin interaction
ENSG00000169957	Chromatin interaction
ENSG00000261459	Chromatin interaction
ENSG00000179958	Chromatin interaction
ENSG00000222287	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905727	chr16:30564526-30689696	Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
7	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
8	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
9	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
10	nsv905730	chr16:30667031-30681816	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
11	nsv905731	chr16:30667031-30685089	Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
12	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
13	esv3506214	chr16:30670001-30672099	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	46 gene(s)	inside rSNPs	diseases
14	esv3506215	chr16:30670001-30672099	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30668600-30672800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr16:30668800-30671200	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr16:30668800-30671400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:30668800-30671400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr16:30668800-30671400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:30668800-30671400	Active TSS	Fetal Brain Female	brain
7	chr16:30668800-30671400	Active TSS	Psoas Muscle	Psoas
8	chr16:30668800-30671800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr16:30668800-30672000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr16:30668800-30672000	Active TSS	Gastric	stomach
11	chr16:30669000-30671200	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr16:30669000-30671200	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr16:30669000-30671200	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr16:30669000-30671200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr16:30669000-30671200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr16:30669000-30671200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr16:30669000-30671200	Active TSS	Brain Germinal Matrix	brain
18	chr16:30669000-30671400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr16:30669000-30671400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr16:30669000-30671400	Active TSS	Brain Cingulate Gyrus	brain
21	chr16:30669000-30671400	Active TSS	Brain Hippocampus Middle	brain
22	chr16:30669000-30671600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr16:30669000-30671600	Active TSS	Fetal Kidney	kidney
24	chr16:30669000-30671600	Active TSS	Placenta Amnion	Placenta Amnion
25	chr16:30669000-30671600	Active TSS	Spleen	Spleen
26	chr16:30669000-30671600	Active TSS	Osteobl	bone
27	chr16:30669000-30671800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr16:30669000-30671800	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr16:30669000-30671800	Active TSS	Left Ventricle	heart
30	chr16:30669000-30671800	Active TSS	Rectal Smooth Muscle	rectum
31	chr16:30669000-30671800	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr16:30669000-30671800	Active TSS	A549	lung
33	chr16:30669000-30671800	Active TSS	HSMMtube	muscle
34	chr16:30669000-30672000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr16:30669000-30672200	Active TSS	Esophagus	oesophagus
36	chr16:30669000-30672200	Active TSS	Small Intestine	intestine
37	chr16:30669200-30671200	Active TSS	H1 Cell Line	embryonic stem cell
38	chr16:30669200-30671200	Active TSS	Primary monocytes fromperipheralblood	blood
39	chr16:30669200-30671200	Active TSS	Primary B cells from cord blood	blood
40	chr16:30669200-30671200	Active TSS	Primary B cells from peripheral blood	blood
41	chr16:30669200-30671200	Active TSS	Primary T cells fromperipheralblood	blood
42	chr16:30669200-30671200	Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr16:30669200-30671200	Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr16:30669200-30671200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr16:30669200-30671200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr16:30669200-30671200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr16:30669200-30671200	Active TSS	Adipose Nuclei	Adipose
48	chr16:30669200-30671200	Active TSS	Liver	Liver
49	chr16:30669200-30671200	Active TSS	Fetal Intestine Small	intestine
50	chr16:30669200-30671200	Active TSS	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links