Variant report

Variant	rs1861128
Chromosome Location	chr4:27918884-27918885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10015871	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv984567	chr4:27887719-27919643	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv4282	chr4:27914655-27959474	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27917000-27923600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:27917200-27919800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:27918000-27919200	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:27918000-27919200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr4:27918000-27919600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:27918000-27919600	Enhancers	Brain Angular Gyrus	brain
7	chr4:27918000-27919800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:27918000-27920400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:27918000-27921400	Enhancers	Brain Substantia Nigra	brain
10	chr4:27918200-27919400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:27918200-27921000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:27918600-27919600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:27918600-27922800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:27918800-27919000	Enhancers	Brain Hippocampus Middle	brain
15	chr4:27918800-27919200	Enhancers	Brain Anterior Caudate	brain
16	chr4:27918800-27919400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr4:27918800-27922600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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