Variant report

Variant	rs186165575
Chromosome Location	chr11:71848155-71848156
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:71848140-71848231	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr11:71848081-71848298	Hela-S3	cervix:	n/a	n/a
3	SMC3	chr11:71848084-71848224	Hela-S3	cervix:	n/a	n/a
4	MAX	chr11:71848054-71848252	Hela-S3	cervix:	n/a	chr11:71848082-71848091
5	MAX	chr11:71847915-71848158	ECC-1	luminal epithelium:	n/a	chr11:71848082-71848091

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71821479..71826547-chr11:71844956..71851162,6	K562	blood:

Variant related genes	Relation type
FOLR3	TF binding region
ENSG00000110200	Chromatin interaction
ENSG00000110203	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv1054858	chr11:71847797-71880291	Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71828400-71850800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:71834400-71851000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:71845600-71848800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr11:71846600-71848800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
5	chr11:71846800-71848800	Active TSS	Primary B cells from cord blood	blood
6	chr11:71846800-71850600	Weak transcription	Spleen	Spleen
7	chr11:71846800-71853400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:71847000-71848200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:71847400-71848400	Active TSS	Primary hematopoietic stem cells	blood
10	chr11:71847400-71851000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:71847600-71848600	Enhancers	Hela-S3	cervix
12	chr11:71847600-71850600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:71847600-71850800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:71847600-71851000	Weak transcription	NH-A	brain
15	chr11:71847800-71848600	Enhancers	NHEK	skin
16	chr11:71847800-71850800	Weak transcription	Osteobl	bone
17	chr11:71847800-71851400	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
18	chr11:71848000-71848200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:71848000-71848200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr11:71848000-71848400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:71848000-71850400	Weak transcription	Esophagus	oesophagus
22	chr11:71848000-71850600	Weak transcription	NHDF-Ad	bronchial
23	chr11:71848000-71850800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:71848000-71852000	Weak transcription	HSMMtube	muscle
25	chr11:71848000-71852600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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