Variant report

Variant	rs186194737
Chromosome Location	chr3:120465362-120465363
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:120465252-120465424	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
RABL3	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv829699	chr3:120308332-120484695	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv877378	chr3:120381530-120606438	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1005396	chr3:120460741-120580319	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	esv1797756	chr3:120464660-120473719	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120462400-120471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:120462600-120495200	Weak transcription	Aorta	Aorta
3	chr3:120462800-120465400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:120462800-120468600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:120462800-120469400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:120462800-120469400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:120462800-120469400	Weak transcription	Placenta	Placenta
8	chr3:120462800-120469400	Weak transcription	Lung	lung
9	chr3:120462800-120469400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:120462800-120469400	Weak transcription	HSMMtube	muscle
11	chr3:120462800-120472200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:120462800-120473000	Weak transcription	Brain Anterior Caudate	brain
13	chr3:120462800-120483000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:120462800-120485600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:120462800-120499800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:120462800-120500000	Weak transcription	Gastric	stomach
17	chr3:120462800-120503000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:120463000-120469200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr3:120463000-120469200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:120463000-120469400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:120463000-120469400	Weak transcription	Primary T cells from cord blood	blood
22	chr3:120463000-120469400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr3:120463000-120469400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:120463000-120469400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:120463000-120469400	Weak transcription	Esophagus	oesophagus
26	chr3:120463000-120469400	Weak transcription	Fetal Stomach	stomach
27	chr3:120463000-120469400	Weak transcription	Fetal Thymus	thymus
28	chr3:120463000-120469400	Weak transcription	Left Ventricle	heart
29	chr3:120463000-120469400	Weak transcription	Ovary	ovary
30	chr3:120463000-120469400	Weak transcription	Psoas Muscle	Psoas
31	chr3:120463000-120469400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr3:120463000-120469400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr3:120463000-120469400	Weak transcription	HSMM	muscle
34	chr3:120463000-120469400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr3:120463000-120470000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:120463000-120472000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:120463000-120472000	Weak transcription	Stomach Mucosa	stomach
38	chr3:120463000-120472600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr3:120463000-120473200	Weak transcription	NHLF	lung
40	chr3:120463000-120477800	Weak transcription	Spleen	Spleen
41	chr3:120463000-120482400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:120463000-120484800	Weak transcription	K562	blood
43	chr3:120463000-120485600	Weak transcription	Pancreas	Pancrea
44	chr3:120463000-120485600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr3:120463000-120485600	Weak transcription	HMEC	breast
46	chr3:120463000-120493600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:120463000-120496000	Weak transcription	Fetal Lung	lung
48	chr3:120463000-120499800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:120463000-120502000	Weak transcription	Colonic Mucosa	Colon
50	chr3:120463000-120504200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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