Variant report

Variant	rs1862064
Chromosome Location	chr2:34466836-34466837
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10180100	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10865096	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11124366	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11687656	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11889234	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13407683	0.96[ASN][1000 genomes]
rs2005906	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2112018	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2193808	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2216491	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371922	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4417695	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs5023562	0.96[ASN][1000 genomes]
rs5023563	0.96[ASN][1000 genomes]
rs6729467	0.84[AFR][1000 genomes]
rs6733379	0.96[ASN][1000 genomes]
rs6748315	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6757428	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7569103	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7569181	0.86[AFR][1000 genomes]
rs7574426	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7584555	0.81[AFR][1000 genomes]
rs7586688	0.92[ASN][1000 genomes]
rs918328	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs972053	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006001	chr2:33991364-34858721	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv535628	chr2:33991364-34858721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv873799	chr2:33996983-34821990	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv999091	chr2:34154486-34993188	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv535629	chr2:34154486-34993188	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv873804	chr2:34156867-35047107	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv873808	chr2:34275757-34703057	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1012401	chr2:34302403-34468097	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv833714	chr2:34348193-34504892	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv873810	chr2:34456200-35047107	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:34465400-34467400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:34465600-34468400	Enhancers	Ovary	ovary
3	chr2:34465800-34468000	Enhancers	Fetal Kidney	kidney
4	chr2:34466400-34467000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:34466400-34467600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr2:34466400-34468200	Enhancers	Pancreas	Pancrea
7	chr2:34466400-34468400	Enhancers	Fetal Lung	lung
8	chr2:34466400-34468600	Enhancers	Fetal Brain Male	brain
9	chr2:34466600-34467400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr2:34466600-34468600	Enhancers	Liver	Liver
11	chr2:34466800-34467800	Enhancers	Fetal Brain Female	brain

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