Variant report

Variant	rs1862182
Chromosome Location	chr5:95999526-95999527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95995785..95997823-chr5:95999172..96000986,2	K562	blood:

Variant related genes	Relation type
ENSG00000153113	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs152019	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1015173	chr5:95987366-96153392	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95996600-95999600	Active TSS	Brain Hippocampus Middle	brain
2	chr5:95996800-95999600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:95996800-95999600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr5:95996800-95999600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:95996800-95999600	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr5:95996800-95999600	Active TSS	Aorta	Aorta
7	chr5:95996800-95999600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr5:95996800-95999600	Active TSS	Psoas Muscle	Psoas
9	chr5:95996800-95999600	Active TSS	Right Atrium	heart
10	chr5:95996800-95999600	Active TSS	HSMMtube	muscle
11	chr5:95996800-95999800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:95996800-96000200	Active TSS	A549	lung
13	chr5:95996800-96000200	Active TSS	NHLF	lung
14	chr5:95997000-95999600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:95997000-95999600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:95997000-95999600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:95997000-95999600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:95997000-95999600	Active TSS	Brain Substantia Nigra	brain
19	chr5:95997000-95999800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:95997000-95999800	Active TSS	HSMM	muscle
21	chr5:95997200-95999600	Active TSS	Lung	lung
22	chr5:95997200-95999600	Active TSS	Sigmoid Colon	Sigmoid Colon
23	chr5:95997200-95999600	Active TSS	Small Intestine	intestine
24	chr5:95997200-96000200	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr5:95997200-96000800	Active TSS	Stomach Mucosa	stomach
26	chr5:95997400-95999600	Active TSS	Muscle Satellite Cultured Cells	--
27	chr5:95997400-96000000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:95997600-95999600	Active TSS	Gastric	stomach
29	chr5:95998600-95999600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
30	chr5:95998600-95999600	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr5:95998600-95999600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:95998600-95999600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:95998800-95999600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
34	chr5:95998800-95999600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr5:95998800-95999600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
36	chr5:95998800-95999600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr5:95998800-95999600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr5:95998800-95999600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr5:95998800-95999600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr5:95998800-95999600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:95998800-95999600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr5:95998800-95999600	Flanking Active TSS	Liver	Liver
43	chr5:95998800-95999600	Flanking Active TSS	Fetal Muscle Leg	muscle
44	chr5:95998800-95999600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr5:95998800-95999600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr5:95998800-95999800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr5:95998800-95999800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr5:95998800-95999800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr5:95999000-95999600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr5:95999000-95999600	Flanking Active TSS	Primary T cells from cord blood	blood

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