Variant report

Variant	rs186247552
Chromosome Location	chr6:36569888-36569889
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36510024..36516034-chr6:36569455..36577118,9	MCF-7	breast:
2	chr6:36410434..36413088-chr6:36566974..36569964,3	K562	blood:
3	chr6:36403741..36414959-chr6:36560215..36569964,50	K562	blood:
4	chr6:36559895..36571260-chr6:36642384..36648914,19	MCF-7	breast:
5	chr6:36339409..36341953-chr6:36569258..36572239,2	K562	blood:

Variant related genes	Relation type
ENSG00000112078	Chromatin interaction
ENSG00000124762	Chromatin interaction
ENSG00000112079	Chromatin interaction
ENSG00000179165	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv969391	chr6:36569791-36570791	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36562600-36570400	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr6:36562600-36571800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:36564000-36570400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
4	chr6:36564000-36571600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
5	chr6:36564400-36570400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
6	chr6:36564800-36570400	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr6:36565400-36574200	Genic enhancers	Fetal Heart	heart
8	chr6:36566000-36570000	Genic enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:36566400-36570400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:36566600-36577400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:36566800-36570600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:36566800-36577800	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr6:36566800-36582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:36567000-36570200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:36567000-36574400	Genic enhancers	A549	lung
16	chr6:36567000-36580400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:36567400-36570400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:36567600-36578400	Genic enhancers	Liver	Liver
19	chr6:36567800-36575600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:36568000-36570400	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:36568000-36570400	Genic enhancers	Brain Cingulate Gyrus	brain
22	chr6:36568000-36572200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:36568000-36574200	Genic enhancers	Rectal Smooth Muscle	rectum
24	chr6:36568000-36575200	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr6:36568000-36576200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:36568000-36577800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:36568000-36581400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr6:36568200-36570000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:36568200-36570200	Strong transcription	HSMMtube	muscle
30	chr6:36568200-36570200	Genic enhancers	HUVEC	blood vessel
31	chr6:36568200-36570400	Genic enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:36568200-36570800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:36568200-36571000	Weak transcription	Ovary	ovary
34	chr6:36568200-36572000	Genic enhancers	Brain Substantia Nigra	brain
35	chr6:36568200-36572200	Strong transcription	Left Ventricle	heart
36	chr6:36568200-36573000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:36568200-36573600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:36568200-36574200	Genic enhancers	Muscle Satellite Cultured Cells	--
39	chr6:36568200-36574200	Genic enhancers	Duodenum Smooth Muscle	Duodenum
40	chr6:36568200-36574400	Strong transcription	Colonic Mucosa	Colon
41	chr6:36568200-36575200	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr6:36568200-36577400	Genic enhancers	NHEK	skin
43	chr6:36568200-36580200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:36568400-36570000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
45	chr6:36568400-36571000	Weak transcription	Stomach Mucosa	stomach
46	chr6:36568400-36571200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:36568400-36575800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:36568600-36570000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr6:36568600-36570400	Genic enhancers	Primary T cells fromperipheralblood	blood
50	chr6:36568600-36570800	Genic enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links