Variant report

Variant	rs186250917
Chromosome Location	chr2:36986321-36986322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv3364052	chr2:36985996-36991463	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv820661	chr2:36986155-36991048	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv828920	chr2:36986155-36991048	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3435848	chr2:36986190-36991198	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3457538	chr2:36986217-36991195	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3457537	chr2:36986274-36991124	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3457539	chr2:36986274-36991124	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv14542	chr2:36986295-36991029	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36971400-36992600	Weak transcription	Ovary	ovary
2	chr2:36971600-36992600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:36973400-36987600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:36980000-36989800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:36982000-36986400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:36982200-36989400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:36982800-36996400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:36983800-36989400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:36984000-36988000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:36984000-36989800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:36984400-36987800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:36986000-36987000	Enhancers	Brain Hippocampus Middle	brain
13	chr2:36986200-36987000	Active TSS	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links