Variant report

Variant	rs1862843
Chromosome Location	chr16:81380132-81380133
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81344166..81347123-chr16:81377897..81380361,2	MCF-7	breast:
2	chr16:81068493..81070605-chr16:81379712..81382493,2	MCF-7	breast:
3	chr16:81368268..81371015-chr16:81379390..81381127,2	K562	blood:
4	chr16:81347335..81348972-chr16:81380044..81382271,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260213	Chromatin interaction
ENSG00000166454	Chromatin interaction
ENSG00000261609	Chromatin interaction
ENSG00000260495	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1035573	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11150386	0.89[YRI][hapmap]
rs11647874	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11859133	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12448327	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12925347	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12925975	0.91[EUR][1000 genomes]
rs12929595	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12929776	0.82[AMR][1000 genomes]
rs17188615	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs1895539	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1946285	0.95[CEU][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1946287	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1981884	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2059280	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2081264	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2216771	0.95[CEU][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2317127	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2550738	0.96[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs2608554	0.91[EUR][1000 genomes]
rs2615701	0.87[CEU][hapmap]
rs2911441	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs310025	0.82[CEU][hapmap]
rs310032	0.91[CEU][hapmap]
rs310034	0.94[EUR][1000 genomes]
rs310035	0.95[CEU][hapmap];0.80[YRI][hapmap];0.94[EUR][1000 genomes]
rs4625712	0.82[EUR][1000 genomes]
rs4888144	0.81[EUR][1000 genomes]
rs4889299	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs4889300	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4889302	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4889307	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs4889308	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6564871	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7184259	1.00[YRI][hapmap]
rs7191409	0.95[CEU][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7202902	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs889747	0.83[EUR][1000 genomes]
rs918773	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs918775	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9673346	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9673795	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9674190	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9889027	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
5	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
6	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
7	esv1792674	chr16:81375316-81391868	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81353400-81390400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr16:81354200-81391600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr16:81366400-81380400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:81379200-81381200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr16:81379200-81381600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr16:81379400-81380200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr16:81379400-81380600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr16:81379400-81381400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:81379400-81410600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr16:81380000-81380800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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