Variant report

Variant	rs1862875
Chromosome Location	chr5:167182055-167182056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10064302	1.00[ASN][1000 genomes]
rs10064701	1.00[ASN][1000 genomes]
rs10068821	1.00[ASN][1000 genomes]
rs10072896	1.00[ASN][1000 genomes]
rs10454966	0.88[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948139	1.00[ASN][1000 genomes]
rs13174776	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13357813	1.00[ASN][1000 genomes]
rs13357822	1.00[ASN][1000 genomes]
rs13436693	1.00[ASN][1000 genomes]
rs17069188	1.00[ASN][1000 genomes]
rs2337001	1.00[ASN][1000 genomes]
rs34725756	1.00[ASN][1000 genomes]
rs35325704	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242225	1.00[ASN][1000 genomes]
rs4869077	1.00[ASN][1000 genomes]
rs57989047	1.00[ASN][1000 genomes]
rs66525444	1.00[ASN][1000 genomes]
rs66851511	1.00[ASN][1000 genomes]
rs72830099	1.00[ASN][1000 genomes]
rs7448951	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs9313387	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9313388	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167178600-167186200	Weak transcription	Osteobl	bone
2	chr5:167180400-167185200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:167181200-167182400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:167181200-167182400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:167181200-167185200	Weak transcription	NHEK	skin
6	chr5:167181400-167182400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:167181400-167183000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:167181400-167185000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:167181600-167182400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:167181600-167182400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:167181800-167182200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr5:167181800-167182200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:167181800-167182200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:167181800-167182200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:167181800-167182200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:167181800-167182200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:167181800-167182200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:167181800-167182200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:167181800-167182200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:167181800-167182400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr5:167181800-167182400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:167181800-167182400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:167181800-167182400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:167181800-167182400	Flanking Active TSS	NH-A	brain
25	chr5:167181800-167183000	Flanking Active TSS	NHDF-Ad	bronchial
26	chr5:167181800-167183400	Enhancers	HSMMtube	muscle
27	chr5:167182000-167182200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:167182000-167182400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:167182000-167182400	Active TSS	Fetal Kidney	kidney
30	chr5:167182000-167182400	Flanking Active TSS	HSMM	muscle

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