Variant report

Variant	rs186333567
Chromosome Location	chr3:23121990-23121991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006921	chr3:23121967-23155165	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23118600-23123000	Weak transcription	Aorta	Aorta
2	chr3:23119000-23122200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:23119200-23122000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:23119400-23122000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:23119400-23122000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:23119400-23122000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:23119600-23122200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:23120000-23122000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:23120800-23122000	Enhancers	Fetal Heart	heart
10	chr3:23121000-23122000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:23121000-23122000	Enhancers	Fetal Muscle Leg	muscle
12	chr3:23121000-23122000	Enhancers	Pancreas	Pancrea
13	chr3:23121000-23122000	Enhancers	HSMM	muscle
14	chr3:23121200-23122000	Active TSS	Duodenum Mucosa	Duodenum
15	chr3:23121200-23122000	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr3:23121200-23122000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr3:23121200-23122000	Flanking Active TSS	A549	lung
18	chr3:23121200-23122000	Flanking Active TSS	HSMMtube	muscle
19	chr3:23121400-23122000	Enhancers	Fetal Lung	lung
20	chr3:23121400-23122000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr3:23121400-23122000	Flanking Active TSS	Hela-S3	cervix
22	chr3:23121600-23122000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr3:23121600-23122000	Active TSS	Primary hematopoietic stem cells	blood
24	chr3:23121600-23122000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:23121600-23122000	Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr3:23121600-23122200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:23121600-23125000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:23121800-23122000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:23121800-23122000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr3:23121800-23122000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:23121800-23122000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:23121800-23122000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:23121800-23122000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:23121800-23122000	Enhancers	Adipose Nuclei	Adipose
35	chr3:23121800-23122000	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr3:23121800-23122000	Enhancers	HMEC	breast
37	chr3:23121800-23122000	Active TSS	Monocytes-CD14+_RO01746	blood
38	chr3:23121800-23122000	Enhancers	NHEK	skin
39	chr3:23121800-23122200	Enhancers	Colon Smooth Muscle	Colon
40	chr3:23121800-23127200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links