Variant report

Variant	rs186337688
Chromosome Location	chr15:35462253-35462254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3323896	chr15:35461212-35462267	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35458800-35473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:35459200-35467800	Weak transcription	Fetal Kidney	kidney
3	chr15:35459800-35463000	Enhancers	NHDF-Ad	bronchial
4	chr15:35460000-35462800	Enhancers	Rectal Smooth Muscle	rectum
5	chr15:35460200-35463400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr15:35460400-35462600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:35460600-35463400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:35461000-35462800	Enhancers	Colon Smooth Muscle	Colon
9	chr15:35461000-35463600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:35461200-35462400	Weak transcription	NH-A	brain
11	chr15:35461200-35462600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:35461600-35462800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:35461800-35463000	Enhancers	NHLF	lung
14	chr15:35461800-35463200	Enhancers	Osteobl	bone
15	chr15:35461800-35463600	Enhancers	K562	blood
16	chr15:35462200-35462400	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr15:35462200-35462600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:35462200-35462800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:35462200-35463600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links