Variant report

Variant	rs1863414
Chromosome Location	chr4:73776270-73776271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12499146	0.84[EUR][1000 genomes]
rs12507174	0.84[EUR][1000 genomes]
rs12508323	0.84[EUR][1000 genomes]
rs12511635	0.84[EUR][1000 genomes]
rs13107862	0.87[EUR][1000 genomes]
rs13116651	0.84[EUR][1000 genomes]
rs13146028	0.84[EUR][1000 genomes]
rs167563	0.81[ASN][1000 genomes]
rs16848920	0.84[EUR][1000 genomes]
rs1863413	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2085844	0.84[EUR][1000 genomes]
rs2114153	0.83[ASN][1000 genomes]
rs2366703	0.84[EUR][1000 genomes]
rs2614305	0.81[ASN][1000 genomes]
rs28361466	0.81[ASN][1000 genomes]
rs28367025	0.81[ASN][1000 genomes]
rs315384	0.81[ASN][1000 genomes]
rs315385	0.81[ASN][1000 genomes]
rs315403	0.81[ASN][1000 genomes]
rs315404	0.81[ASN][1000 genomes]
rs34811686	0.83[EUR][1000 genomes]
rs35929589	0.84[EUR][1000 genomes]
rs4235107	0.83[ASN][1000 genomes]
rs4377558	0.83[ASN][1000 genomes]
rs4407473	0.83[ASN][1000 genomes]
rs4456931	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4694575	0.82[ASN][1000 genomes]
rs62311372	0.84[EUR][1000 genomes]
rs62313454	0.84[EUR][1000 genomes]
rs6446899	0.80[ASN][1000 genomes]
rs6818977	0.83[ASN][1000 genomes]
rs6837908	0.83[ASN][1000 genomes]
rs7673660	0.84[EUR][1000 genomes]
rs7682338	0.83[ASN][1000 genomes]
rs7682517	0.83[ASN][1000 genomes]
rs7692717	0.84[EUR][1000 genomes]
rs919047	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1005704	chr4:73708248-73907315	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv829971	chr4:73709753-73880451	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv432611	chr4:73740665-74099265	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv523169	chr4:73752242-74120910	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv998707	chr4:73753922-74044843	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv537136	chr4:73753922-74044843	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv917017	chr4:73754127-74044830	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1863414	DCK	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73775600-73776400	Enhancers	Brain Inferior Temporal Lobe	brain

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