Variant report

Variant	rs186380845
Chromosome Location	chr4:90056181-90056182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:90043352..90045261-chr4:90054968..90057885,2	MCF-7	breast:
2	chr4:90036580..90038226-chr4:90055929..90057591,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470052	chr4:90055898-90075384	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90046000-90056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:90050800-90059000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:90055200-90056200	Enhancers	NHDF-Ad	bronchial
4	chr4:90055400-90056400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:90055400-90057000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:90055400-90058200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:90055800-90056200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:90055800-90056200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:90055800-90056200	Enhancers	Fetal Intestine Large	intestine
10	chr4:90055800-90056600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:90055800-90058600	Enhancers	NHEK	skin
12	chr4:90056000-90056200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:90056000-90056200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:90056000-90056200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:90056000-90056200	Active TSS	Brain Angular Gyrus	brain
16	chr4:90056000-90056200	Enhancers	Brain Germinal Matrix	brain
17	chr4:90056000-90056200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:90056000-90056200	Enhancers	Right Atrium	heart
19	chr4:90056000-90056200	Enhancers	HSMMtube	muscle
20	chr4:90056000-90056400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:90056000-90056400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr4:90056000-90056400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:90056000-90056400	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr4:90056000-90056400	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr4:90056000-90056400	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr4:90056000-90056400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr4:90056000-90056400	Enhancers	Brain Substantia Nigra	brain
28	chr4:90056000-90056400	Enhancers	Colon Smooth Muscle	Colon
29	chr4:90056000-90056400	Enhancers	Fetal Kidney	kidney
30	chr4:90056000-90056400	Enhancers	Fetal Lung	lung
31	chr4:90056000-90056400	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr4:90056000-90056400	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr4:90056000-90056400	Enhancers	HMEC	breast
34	chr4:90056000-90056400	Enhancers	NH-A	brain
35	chr4:90056000-90056400	Enhancers	NHLF	lung
36	chr4:90056000-90056400	Enhancers	Osteobl	bone
37	chr4:90056000-90056600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:90056000-90056600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr4:90056000-90056600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr4:90056000-90056600	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr4:90056000-90056600	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr4:90056000-90056600	Enhancers	Fetal Brain Female	brain
43	chr4:90056000-90057800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:90056000-90058000	Enhancers	A549	lung

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