Variant report

Variant	rs186407605
Chromosome Location	chr2:153298059-153298060
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:153297043..153301991-chr2:153303133..153306232,4	K562	blood:
2	chr2:153296273..153298770-chr2:153299861..153302070,2	K562	blood:
3	chr2:153290893..153293796-chr2:153295142..153299190,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875291	chr2:153251742-153339823	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv2754362	chr2:153297577-153366129	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153280000-153305200	Enhancers	Brain Cingulate Gyrus	brain
2	chr2:153282600-153304400	Enhancers	Brain Anterior Caudate	brain
3	chr2:153286200-153301000	Enhancers	Brain Hippocampus Middle	brain
4	chr2:153286400-153305200	Enhancers	Brain Substantia Nigra	brain
5	chr2:153289200-153301800	Weak transcription	NH-A	brain
6	chr2:153289600-153301400	Weak transcription	Fetal Thymus	thymus
7	chr2:153290200-153300400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:153291200-153300600	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:153291600-153300000	Weak transcription	Right Atrium	heart
10	chr2:153291600-153305200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:153291800-153300000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:153293600-153302400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr2:153294200-153298400	Weak transcription	GM12878-XiMat	blood
14	chr2:153294600-153300600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:153295000-153302200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:153295200-153300800	Weak transcription	HepG2	liver
17	chr2:153295400-153299400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:153295400-153299600	Weak transcription	Psoas Muscle	Psoas
19	chr2:153295400-153299800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr2:153295400-153300000	Weak transcription	Fetal Muscle Leg	muscle
21	chr2:153295400-153300200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr2:153295400-153300800	Weak transcription	Fetal Brain Female	brain
23	chr2:153295400-153302000	Weak transcription	Fetal Stomach	stomach
24	chr2:153295400-153308600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:153295400-153311000	Weak transcription	Ovary	ovary
26	chr2:153295800-153305200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:153296000-153298600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:153296000-153301800	Weak transcription	Fetal Brain Male	brain
29	chr2:153297000-153299400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:153297000-153299600	Weak transcription	Placenta	Placenta
31	chr2:153297000-153300000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:153297000-153300400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:153297000-153300400	Weak transcription	Adipose Nuclei	Adipose
34	chr2:153297000-153301200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr2:153297000-153301400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:153297000-153302000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr2:153297000-153302200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:153297000-153305600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:153297200-153300400	Weak transcription	Fetal Lung	lung
40	chr2:153297200-153301400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr2:153297200-153301600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr2:153297200-153302000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr2:153297200-153302200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr2:153297200-153302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr2:153297400-153301400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr2:153297400-153302400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr2:153297600-153302200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr2:153298000-153298800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr2:153298000-153299000	Weak transcription	Brain Angular Gyrus	brain
50	chr2:153298000-153299000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links