Variant report

Variant	rs186418464
Chromosome Location	chr6:46111980-46111981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46110640..46112825-chr6:46112958..46115144,2	K562	blood:
2	chr6:46107057..46110054-chr6:46111949..46114711,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022912	chr6:46093409-46116449	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv1842212	chr6:46111940-46127836	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46098800-46112400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:46098800-46112800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:46098800-46112800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:46098800-46112800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:46098800-46113000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:46098800-46117800	Weak transcription	Gastric	stomach
7	chr6:46098800-46129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:46101600-46112000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:46101800-46112000	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:46101800-46113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:46102200-46113000	Weak transcription	Fetal Intestine Large	intestine
12	chr6:46105000-46114600	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:46105400-46115000	Weak transcription	Aorta	Aorta
14	chr6:46105400-46133800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:46105600-46113200	Weak transcription	Spleen	Spleen
16	chr6:46105600-46128600	Weak transcription	Brain Angular Gyrus	brain
17	chr6:46105600-46137400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:46105800-46112800	Weak transcription	HSMMtube	muscle
19	chr6:46106400-46112600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:46106400-46112800	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:46106400-46125400	Weak transcription	Psoas Muscle	Psoas
22	chr6:46106400-46138000	Weak transcription	Lung	lung
23	chr6:46106600-46112800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:46106600-46112800	Weak transcription	Liver	Liver
25	chr6:46107800-46114000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:46108000-46130000	Weak transcription	Brain Substantia Nigra	brain
27	chr6:46108800-46112600	Weak transcription	Ovary	ovary
28	chr6:46109600-46112400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:46109800-46112000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:46109800-46112400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:46110200-46112400	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr6:46110400-46112000	Weak transcription	Fetal Lung	lung
33	chr6:46110400-46112800	Enhancers	Fetal Heart	heart
34	chr6:46110600-46112800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:46110600-46112800	Strong transcription	Dnd41	blood
36	chr6:46110800-46112400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:46111200-46114600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr6:46111400-46112000	Weak transcription	Adipose Nuclei	Adipose
39	chr6:46111400-46112400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:46111400-46113000	Weak transcription	Left Ventricle	heart
41	chr6:46111400-46113000	Weak transcription	Thymus	Thymus
42	chr6:46111400-46113200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:46111400-46113800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:46111400-46114200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr6:46111400-46114200	Weak transcription	GM12878-XiMat	blood
46	chr6:46111400-46114800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:46111400-46115200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:46111400-46116200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr6:46111400-46117200	Weak transcription	Brain Anterior Caudate	brain
50	chr6:46111400-46125200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links