Variant report

Variant	rs1864372
Chromosome Location	chr4:147143572-147143573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17021257	0.85[CHB][hapmap];0.90[ASN][1000 genomes]
rs72948620	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855513	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461674	chr4:147047072-147143572	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv595650	chr4:147047072-147143572	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147114000-147144800	Weak transcription	Gastric	stomach
2	chr4:147136600-147144400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:147143400-147143600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:147143400-147143800	Active TSS	Muscle Satellite Cultured Cells	--
5	chr4:147143400-147143800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:147143400-147143800	Active TSS	A549	lung
7	chr4:147143400-147143800	Active TSS	HSMM	muscle
8	chr4:147143400-147143800	Flanking Active TSS	NH-A	brain
9	chr4:147143400-147143800	Active TSS	Osteobl	bone
10	chr4:147143400-147144000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:147143400-147144000	Active TSS	NHLF	lung
12	chr4:147143400-147144200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:147143400-147144200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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