Variant report

Variant	rs186441082
Chromosome Location	chr5:35850990-35850991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:35850803-35851119	MCF10A-Er-Src	breast:	n/a	chr5:35850957-35850965

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35849089..35851096-chr5:35897625..35900411,2	K562	blood:

Variant related genes	Relation type
IL7R	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv881055	chr5:35850693-35858721	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv881685	chr5:35850693-35859863	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv881358	chr5:35850693-35861068	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv880610	chr5:35850693-35866265	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv880517	chr5:35850693-35870814	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35848400-35852200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr5:35848600-35852000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:35848800-35851200	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:35848800-35852400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:35849200-35852000	Enhancers	Primary T cells from cord blood	blood
6	chr5:35849600-35852200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:35849600-35856200	Enhancers	Dnd41	blood
8	chr5:35849800-35852200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:35849800-35852600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr5:35849800-35852800	Enhancers	Thymus	Thymus
11	chr5:35849800-35853200	Enhancers	Fetal Thymus	thymus
12	chr5:35850000-35851000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:35850000-35852200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr5:35850000-35852600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr5:35850200-35852000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:35850200-35852000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr5:35850400-35851200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:35850800-35851000	Enhancers	Osteobl	bone
19	chr5:35850800-35851200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:35850800-35851200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links